miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19096 5' -57.7 NC_004684.1 + 60592 0.66 0.625183
Target:  5'- -aCGGCGuCGUAguGGCCGucgucCAGUg- -3'
miRNA:   3'- caGCCGC-GCAUguCCGGCuc---GUCAaa -5'
19096 5' -57.7 NC_004684.1 + 30666 0.66 0.625183
Target:  5'- -aCGGCGa--ACAGGUCGAuGCGGUa- -3'
miRNA:   3'- caGCCGCgcaUGUCCGGCU-CGUCAaa -5'
19096 5' -57.7 NC_004684.1 + 44435 0.66 0.614343
Target:  5'- cGUUGGCGCGcuuCuGGCCuucGGCGGUg- -3'
miRNA:   3'- -CAGCCGCGCau-GuCCGGc--UCGUCAaa -5'
19096 5' -57.7 NC_004684.1 + 45916 0.66 0.61326
Target:  5'- -cCGGCGCGUugAacaccucgucgguGGUCGGGguGUc- -3'
miRNA:   3'- caGCCGCGCAugU-------------CCGGCUCguCAaa -5'
19096 5' -57.7 NC_004684.1 + 11000 0.66 0.603518
Target:  5'- aGUUGGCGCGcUGCAuGuccaucagcaCCGAGCGGUg- -3'
miRNA:   3'- -CAGCCGCGC-AUGUcC----------GGCUCGUCAaa -5'
19096 5' -57.7 NC_004684.1 + 11494 0.66 0.603518
Target:  5'- -cCGGCG-GUaACAGGCCaucGGGCAGg-- -3'
miRNA:   3'- caGCCGCgCA-UGUCCGG---CUCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 45913 0.66 0.592717
Target:  5'- uGUUGGUGCGcucGCGGGCau-GCAGUUc -3'
miRNA:   3'- -CAGCCGCGCa--UGUCCGgcuCGUCAAa -5'
19096 5' -57.7 NC_004684.1 + 48987 0.66 0.57122
Target:  5'- cGUCGGUGCccUGCuGGCCGGGCc---- -3'
miRNA:   3'- -CAGCCGCGc-AUGuCCGGCUCGucaaa -5'
19096 5' -57.7 NC_004684.1 + 3471 0.66 0.57122
Target:  5'- uUCGGCGCGUACAacGCCGuuaccCGGUa- -3'
miRNA:   3'- cAGCCGCGCAUGUc-CGGCuc---GUCAaa -5'
19096 5' -57.7 NC_004684.1 + 26542 0.66 0.57122
Target:  5'- --gGGCG-GU-CAGGCCGGGguGUa- -3'
miRNA:   3'- cagCCGCgCAuGUCCGGCUCguCAaa -5'
19096 5' -57.7 NC_004684.1 + 64802 0.66 0.57122
Target:  5'- cGUCGGCGUacucgGU-CGGGUCGGGCAc--- -3'
miRNA:   3'- -CAGCCGCG-----CAuGUCCGGCUCGUcaaa -5'
19096 5' -57.7 NC_004684.1 + 37730 0.66 0.57122
Target:  5'- gGUCGGcCGCGcGCAGGagcaCGucguuGGCGGUUUg -3'
miRNA:   3'- -CAGCC-GCGCaUGUCCg---GC-----UCGUCAAA- -5'
19096 5' -57.7 NC_004684.1 + 10165 0.67 0.559474
Target:  5'- -gUGGgGCGUuuguccgGCAGGCUGAGCAc--- -3'
miRNA:   3'- caGCCgCGCA-------UGUCCGGCUCGUcaaa -5'
19096 5' -57.7 NC_004684.1 + 49113 0.67 0.549915
Target:  5'- gGUCGGUGCcaGCAggcGGCCGGGCGu--- -3'
miRNA:   3'- -CAGCCGCGcaUGU---CCGGCUCGUcaaa -5'
19096 5' -57.7 NC_004684.1 + 7410 0.67 0.54357
Target:  5'- -gCGGCGCGUGCGgcaagguccgggugcGGCaCGAGCGc--- -3'
miRNA:   3'- caGCCGCGCAUGU---------------CCG-GCUCGUcaaa -5'
19096 5' -57.7 NC_004684.1 + 51271 0.67 0.539354
Target:  5'- aUCGGCuCGUACAGGUCG-GCGu--- -3'
miRNA:   3'- cAGCCGcGCAUGUCCGGCuCGUcaaa -5'
19096 5' -57.7 NC_004684.1 + 34650 0.67 0.528862
Target:  5'- gGUCGGCcgcgaCGUACcggucgauguAGGCCGuGCGGUa- -3'
miRNA:   3'- -CAGCCGc----GCAUG----------UCCGGCuCGUCAaa -5'
19096 5' -57.7 NC_004684.1 + 13965 0.67 0.528862
Target:  5'- cUCGGUGaCGUccugacGCAGGCagaccugGAGCAGUUg -3'
miRNA:   3'- cAGCCGC-GCA------UGUCCGg------CUCGUCAAa -5'
19096 5' -57.7 NC_004684.1 + 7850 0.67 0.518447
Target:  5'- -aCGGCGCGcGCuGGCgGuGCAGg-- -3'
miRNA:   3'- caGCCGCGCaUGuCCGgCuCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 49938 0.67 0.518447
Target:  5'- --gGGCGCGUACGGuGuuGAGCuuGUc- -3'
miRNA:   3'- cagCCGCGCAUGUC-CggCUCGu-CAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.