miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 3' -58 NC_004684.1 + 66515 0.69 0.426475
Target:  5'- cGCGGGCCGCcuucAGcgcGGCCCGGCGg -3'
miRNA:   3'- uCGUUCGGUGccuaUCu--CCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 65816 0.67 0.525359
Target:  5'- gGGCAGGUgACcc--GGAGGCaCCGGCGg -3'
miRNA:   3'- -UCGUUCGgUGccuaUCUCCG-GGUCGC- -5'
19100 3' -58 NC_004684.1 + 65532 0.67 0.535758
Target:  5'- ---cGGCCAggUGGAUAuGcGGCCCGGCGu -3'
miRNA:   3'- ucguUCGGU--GCCUAU-CuCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 65338 0.75 0.190075
Target:  5'- aGGCAGGCCAC-GAUGGcGGCCCccagggccaccagGGCGa -3'
miRNA:   3'- -UCGUUCGGUGcCUAUCuCCGGG-------------UCGC- -5'
19100 3' -58 NC_004684.1 + 64930 0.68 0.445396
Target:  5'- cAGguGGCgGCGGu--GAGcGCCUGGCGg -3'
miRNA:   3'- -UCguUCGgUGCCuauCUC-CGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 64701 0.74 0.200837
Target:  5'- cGGcCAGGCCGgGGAUGcGGuGCCCGGCGc -3'
miRNA:   3'- -UC-GUUCGGUgCCUAUcUC-CGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 63906 0.75 0.166918
Target:  5'- uGGC-GGCCACGGu--GcGGCCCGGCGu -3'
miRNA:   3'- -UCGuUCGGUGCCuauCuCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 63851 0.68 0.494647
Target:  5'- cGCugucgguGCCACGugcgcGGUGGcggccuucaucGGGCCCAGCGg -3'
miRNA:   3'- uCGuu-----CGGUGC-----CUAUC-----------UCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 62898 0.66 0.567358
Target:  5'- uGCcguuGCCACGGcgGGccAGGCCCuGGCc -3'
miRNA:   3'- uCGuu--CGGUGCCuaUC--UCCGGG-UCGc -5'
19100 3' -58 NC_004684.1 + 62311 0.66 0.620924
Target:  5'- cGCGGGCCucCGcGAUcucaucgccGGAGGCCUccAGCa -3'
miRNA:   3'- uCGUUCGGu-GC-CUA---------UCUCCGGG--UCGc -5'
19100 3' -58 NC_004684.1 + 61929 0.7 0.355833
Target:  5'- uGCGGGCCACGGcacccgccGGGCCUGGUGc -3'
miRNA:   3'- uCGUUCGGUGCCuauc----UCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 61175 0.66 0.599409
Target:  5'- cGGcCAGGUCgGCGGGguUGGuGGCCuCGGCGu -3'
miRNA:   3'- -UC-GUUCGG-UGCCU--AUCuCCGG-GUCGC- -5'
19100 3' -58 NC_004684.1 + 60749 0.66 0.599409
Target:  5'- cGGguGGCCGcCGGGUGGGGGUuggUCAGg- -3'
miRNA:   3'- -UCguUCGGU-GCCUAUCUCCG---GGUCgc -5'
19100 3' -58 NC_004684.1 + 57801 0.66 0.578001
Target:  5'- gAGCAugcugucccAGCCACGGAUcAGGucGGCCacguguucgCGGCGc -3'
miRNA:   3'- -UCGU---------UCGGUGCCUA-UCU--CCGG---------GUCGC- -5'
19100 3' -58 NC_004684.1 + 57035 0.66 0.599409
Target:  5'- uGGUcGGUCACGG-UGGGccacGGCaCCAGCGc -3'
miRNA:   3'- -UCGuUCGGUGCCuAUCU----CCG-GGUCGC- -5'
19100 3' -58 NC_004684.1 + 53467 0.67 0.546229
Target:  5'- cAGCAccGGCaACGGGUGGuuGGCCagguaGGCGu -3'
miRNA:   3'- -UCGU--UCGgUGCCUAUCu-CCGGg----UCGC- -5'
19100 3' -58 NC_004684.1 + 52240 0.7 0.370138
Target:  5'- cGGCGgcGGCCAgcugcgcgcuggcgUGGAUc-AGGCCCAGCGu -3'
miRNA:   3'- -UCGU--UCGGU--------------GCCUAucUCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 52157 0.66 0.620924
Target:  5'- cGGCGGGCCGuagcugucCGGGUAGGcgaaccGGgCCAGUa -3'
miRNA:   3'- -UCGUUCGGU--------GCCUAUCU------CCgGGUCGc -5'
19100 3' -58 NC_004684.1 + 49504 0.71 0.31605
Target:  5'- cGGCGcGUCGgGGGUguAGcGGCCCAGCGu -3'
miRNA:   3'- -UCGUuCGGUgCCUA--UCuCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 47903 0.76 0.145927
Target:  5'- aGGCAGGCCACGGucGGcGGCCuCGGCc -3'
miRNA:   3'- -UCGUUCGGUGCCuaUCuCCGG-GUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.