miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19104 3' -51.7 NC_004684.1 + 46994 0.66 0.914716
Target:  5'- -cCAGGCuGACCucggccucgugCGCGuacuGCUCGAACGu -3'
miRNA:   3'- cuGUUCGuCUGG-----------GCGUu---CGAGUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 8907 0.66 0.908155
Target:  5'- cGGCAagaagGGCGGGCgCgGCAAGUUCGcGCu -3'
miRNA:   3'- -CUGU-----UCGUCUG-GgCGUUCGAGUuUGc -5'
19104 3' -51.7 NC_004684.1 + 2407 0.66 0.908155
Target:  5'- uGGCGAgccGCAGACCCGCGucGCggUCAucGACc -3'
miRNA:   3'- -CUGUU---CGUCUGGGCGUu-CG--AGU--UUGc -5'
19104 3' -51.7 NC_004684.1 + 26476 0.66 0.901309
Target:  5'- cGACA-GCGuGCCCGCcauGCUCAugccuGGCGa -3'
miRNA:   3'- -CUGUuCGUcUGGGCGuu-CGAGU-----UUGC- -5'
19104 3' -51.7 NC_004684.1 + 50431 0.66 0.901309
Target:  5'- aGCAGguGCAGGCCCGCcuugcAGGCcucgCGGAUGa -3'
miRNA:   3'- cUGUU--CGUCUGGGCG-----UUCGa---GUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 15617 0.66 0.901309
Target:  5'- gGACGAGUA---CCGCGAGCgCGAGCa -3'
miRNA:   3'- -CUGUUCGUcugGGCGUUCGaGUUUGc -5'
19104 3' -51.7 NC_004684.1 + 13981 0.66 0.901309
Target:  5'- cGCAGGCAGACCUggaGCAGuuGC-CcGACGg -3'
miRNA:   3'- cUGUUCGUCUGGG---CGUU--CGaGuUUGC- -5'
19104 3' -51.7 NC_004684.1 + 54569 0.66 0.894182
Target:  5'- cGGCA-GCAGAgCCGCcgucCUCGGGCGc -3'
miRNA:   3'- -CUGUuCGUCUgGGCGuuc-GAGUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 57189 0.66 0.894182
Target:  5'- nGCAGGCGGGCCUGgaAGGCggcggcgCGAugGu -3'
miRNA:   3'- cUGUUCGUCUGGGCg-UUCGa------GUUugC- -5'
19104 3' -51.7 NC_004684.1 + 39268 0.66 0.886779
Target:  5'- uGCGuGCAGGCCaccaGCAAGgcCUCGAACc -3'
miRNA:   3'- cUGUuCGUCUGGg---CGUUC--GAGUUUGc -5'
19104 3' -51.7 NC_004684.1 + 58064 0.66 0.886778
Target:  5'- cACGAGCuGACCgugCGCAccgugcAGCUCGAcCGg -3'
miRNA:   3'- cUGUUCGuCUGG---GCGU------UCGAGUUuGC- -5'
19104 3' -51.7 NC_004684.1 + 38338 0.67 0.879104
Target:  5'- gGACAAggcGguGACCaCGCccAAGCUC-AACGa -3'
miRNA:   3'- -CUGUU---CguCUGG-GCG--UUCGAGuUUGC- -5'
19104 3' -51.7 NC_004684.1 + 636 0.67 0.879104
Target:  5'- cGACGAGCAcggcGACCC-CAAGgaCAccGACGc -3'
miRNA:   3'- -CUGUUCGU----CUGGGcGUUCgaGU--UUGC- -5'
19104 3' -51.7 NC_004684.1 + 5983 0.67 0.879104
Target:  5'- -cCGAGCaAGuCCCGgccuGGCUCAGGCGc -3'
miRNA:   3'- cuGUUCG-UCuGGGCgu--UCGAGUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 28148 0.67 0.869544
Target:  5'- aGCAAGUccuuGGACCCGUcGGCgcgcaagaucagCGAGCGg -3'
miRNA:   3'- cUGUUCG----UCUGGGCGuUCGa-----------GUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 54900 0.67 0.862963
Target:  5'- cGGCAcgaGGCGGcCCUGguGGC-CGAGCGu -3'
miRNA:   3'- -CUGU---UCGUCuGGGCguUCGaGUUUGC- -5'
19104 3' -51.7 NC_004684.1 + 23943 0.67 0.854513
Target:  5'- aGCugcGCGGACCCGCcuGC-CGAGCc -3'
miRNA:   3'- cUGuu-CGUCUGGGCGuuCGaGUUUGc -5'
19104 3' -51.7 NC_004684.1 + 34931 0.67 0.854513
Target:  5'- gGAUAcGCAGguuGCCCGCcGAGUUCGAGuCGa -3'
miRNA:   3'- -CUGUuCGUC---UGGGCG-UUCGAGUUU-GC- -5'
19104 3' -51.7 NC_004684.1 + 47633 0.67 0.854513
Target:  5'- gGGCAccGGCAGGCCgCGCAGGUacugCAcGCu -3'
miRNA:   3'- -CUGU--UCGUCUGG-GCGUUCGa---GUuUGc -5'
19104 3' -51.7 NC_004684.1 + 13773 0.67 0.854513
Target:  5'- uGCGGGUguccGGGCCgCGCGuGCUCAAgaGCGg -3'
miRNA:   3'- cUGUUCG----UCUGG-GCGUuCGAGUU--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.