miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19105 5' -64.8 NC_004684.1 + 48140 0.66 0.311133
Target:  5'- cGGCCCGGUGAugauGGGagcgUUGCGCGGcucCCa -3'
miRNA:   3'- -CCGGGCCACU----UCCg---GGCGUGCCc--GGc -5'
19105 5' -64.8 NC_004684.1 + 58341 0.66 0.325511
Target:  5'- cGCCCGGUGGcccugcuGGCguugCCGCGcCGGuuGCCGc -3'
miRNA:   3'- cCGGGCCACUu------CCG----GGCGU-GCC--CGGC- -5'
19105 5' -64.8 NC_004684.1 + 40377 0.66 0.325511
Target:  5'- gGGCCucggCGGUGgcGGCCUucgGCA--GGCCGg -3'
miRNA:   3'- -CCGG----GCCACuuCCGGG---CGUgcCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 51460 0.66 0.332883
Target:  5'- cGCCCGGUGGccgAGGCCCcCAgGauGGCg- -3'
miRNA:   3'- cCGGGCCACU---UCCGGGcGUgC--CCGgc -5'
19105 5' -64.8 NC_004684.1 + 44435 0.66 0.332883
Target:  5'- cGGCCCGGUGgcGuagucgaccaGCUugaGCACGcuGGCCa -3'
miRNA:   3'- -CCGGGCCACuuC----------CGGg--CGUGC--CCGGc -5'
19105 5' -64.8 NC_004684.1 + 20743 0.66 0.311133
Target:  5'- cGCCUGG---AGGCaCCGCagGCGGuGCCGu -3'
miRNA:   3'- cCGGGCCacuUCCG-GGCG--UGCC-CGGC- -5'
19105 5' -64.8 NC_004684.1 + 56705 0.66 0.338116
Target:  5'- gGGCCCGGgggUGAAGcuggcggugcugauGCCgcgccaGCACGGGaaCCGg -3'
miRNA:   3'- -CCGGGCC---ACUUC--------------CGGg-----CGUGCCC--GGC- -5'
19105 5' -64.8 NC_004684.1 + 66337 0.66 0.311133
Target:  5'- cGuCCCGGUGAc-GCCgGgGCGGGCgGc -3'
miRNA:   3'- cC-GGGCCACUucCGGgCgUGCCCGgC- -5'
19105 5' -64.8 NC_004684.1 + 46507 0.66 0.324781
Target:  5'- aGGCCagcuugccgaugaCGGUGGAcuuGCCUGCACcGGUCGg -3'
miRNA:   3'- -CCGG-------------GCCACUUc--CGGGCGUGcCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 60738 0.66 0.325511
Target:  5'- uGCCCGGcGAccGGGUggCCGC-CGGGUgGg -3'
miRNA:   3'- cCGGGCCaCU--UCCG--GGCGuGCCCGgC- -5'
19105 5' -64.8 NC_004684.1 + 34156 0.66 0.355729
Target:  5'- cGCCCuuuuuGGUGAGcguaagcaguuGGgCCGC-CGGGCUGu -3'
miRNA:   3'- cCGGG-----CCACUU-----------CCgGGCGuGCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 33482 0.66 0.340377
Target:  5'- cGGCUgCGGUGGAcgcggcggcGGCCCuguacuCGCGGGCgGu -3'
miRNA:   3'- -CCGG-GCCACUU---------CCGGGc-----GUGCCCGgC- -5'
19105 5' -64.8 NC_004684.1 + 30603 0.66 0.332141
Target:  5'- cGCCCGcGUgugggcguucuucGAGGGagugaCCGCgacgGCGGGCCa -3'
miRNA:   3'- cCGGGC-CA-------------CUUCCg----GGCG----UGCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 57268 0.66 0.339622
Target:  5'- cGGCCCGcacagcucggccuGUGAcGGCgagCCGCACcccGGCCa -3'
miRNA:   3'- -CCGGGC-------------CACUuCCG---GGCGUGc--CCGGc -5'
19105 5' -64.8 NC_004684.1 + 65342 0.66 0.325511
Target:  5'- aGGCCaCGaUGgcGGCCCcCA-GGGCCa -3'
miRNA:   3'- -CCGG-GCcACuuCCGGGcGUgCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 26310 0.66 0.340377
Target:  5'- aGCUCGGcc-AGG-CCGC-CGGGCCGc -3'
miRNA:   3'- cCGGGCCacuUCCgGGCGuGCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 45827 0.66 0.340377
Target:  5'- -aCCCGGUGAcGGCCUcgGCGGucauGCCGc -3'
miRNA:   3'- ccGGGCCACUuCCGGGcgUGCC----CGGC- -5'
19105 5' -64.8 NC_004684.1 + 1250 0.66 0.340377
Target:  5'- cGCCCGGccccGGCCCagauGCGCuGGCUGg -3'
miRNA:   3'- cCGGGCCacuuCCGGG----CGUGcCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 56464 0.66 0.332883
Target:  5'- aGGCCUGGagcacGAGgccaaacugcucGGCCUGUACGcGCCGa -3'
miRNA:   3'- -CCGGGCCa----CUU------------CCGGGCGUGCcCGGC- -5'
19105 5' -64.8 NC_004684.1 + 45632 0.66 0.332883
Target:  5'- uGCCgGG-GAacAGGCgCaGCGCGcGGCCGa -3'
miRNA:   3'- cCGGgCCaCU--UCCGgG-CGUGC-CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.