miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19105 5' -64.8 NC_004684.1 + 361 0.66 0.332883
Target:  5'- aGCUCGGUGGccAGGCCauCGUGGuGCCGg -3'
miRNA:   3'- cCGGGCCACU--UCCGGgcGUGCC-CGGC- -5'
19105 5' -64.8 NC_004684.1 + 710 0.7 0.179537
Target:  5'- cGCCgGGUGGgaagaccuGGGCaCCGCcggugacCGGGCCGc -3'
miRNA:   3'- cCGGgCCACU--------UCCG-GGCGu------GCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 877 0.69 0.218572
Target:  5'- gGGCCgCGcUGAAggcGGCCCGCGa-GGCCGc -3'
miRNA:   3'- -CCGG-GCcACUU---CCGGGCGUgcCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 1250 0.66 0.340377
Target:  5'- cGCCCGGccccGGCCCagauGCGCuGGCUGg -3'
miRNA:   3'- cCGGGCCacuuCCGGG----CGUGcCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 1408 0.73 0.105073
Target:  5'- uGGCCagcgaccUGGAGGCCUGC-CGGGCCa -3'
miRNA:   3'- -CCGGgcc----ACUUCCGGGCGuGCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 2010 0.68 0.244742
Target:  5'- cGCCUgGGUGggGGUCCGCgaugaccgucGCccugguggcccuggGGGCCGc -3'
miRNA:   3'- cCGGG-CCACuuCCGGGCG----------UG--------------CCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 2182 0.68 0.251828
Target:  5'- uGGCCCGc--GAGGUgCCGCACGGccacuacGCCGa -3'
miRNA:   3'- -CCGGGCcacUUCCG-GGCGUGCC-------CGGC- -5'
19105 5' -64.8 NC_004684.1 + 2678 0.66 0.325511
Target:  5'- uGGaCCCGaUGGAGGCCCugGCGGccGCCa -3'
miRNA:   3'- -CC-GGGCcACUUCCGGGcgUGCC--CGGc -5'
19105 5' -64.8 NC_004684.1 + 3225 0.67 0.277317
Target:  5'- cGCCUGGaaGAGGuGCgCCGCAUccuGGGCCu -3'
miRNA:   3'- cCGGGCCa-CUUC-CG-GGCGUG---CCCGGc -5'
19105 5' -64.8 NC_004684.1 + 3521 0.73 0.105073
Target:  5'- gGGCCCGaUGAAGGCCgccacgcgCGCACGuGGCa- -3'
miRNA:   3'- -CCGGGCcACUUCCGG--------GCGUGC-CCGgc -5'
19105 5' -64.8 NC_004684.1 + 3655 0.67 0.304126
Target:  5'- cGCCCGGUGccGGGUcaUCGUACGguGGCCc -3'
miRNA:   3'- cCGGGCCACu-UCCG--GGCGUGC--CCGGc -5'
19105 5' -64.8 NC_004684.1 + 4175 0.71 0.143125
Target:  5'- uGGCCCGGUu--GcGCCCG-GCGGGCgCGg -3'
miRNA:   3'- -CCGGGCCAcuuC-CGGGCgUGCCCG-GC- -5'
19105 5' -64.8 NC_004684.1 + 4438 0.69 0.223392
Target:  5'- gGGCCUgcuGGcgcagcUGGAGGCCgcacgugCGCGCGaGGCCGu -3'
miRNA:   3'- -CCGGG---CC------ACUUCCGG-------GCGUGC-CCGGC- -5'
19105 5' -64.8 NC_004684.1 + 5071 0.75 0.084772
Target:  5'- aGGCcuCCGGcgaugagaucgcGGAGGCCCGCGCGGcGCUGg -3'
miRNA:   3'- -CCG--GGCCa-----------CUUCCGGGCGUGCC-CGGC- -5'
19105 5' -64.8 NC_004684.1 + 5118 0.67 0.290479
Target:  5'- cGCCUGGaccugcUGAAGGCcaCCGCaugaGCGGGCa- -3'
miRNA:   3'- cCGGGCC------ACUUCCG--GGCG----UGCCCGgc -5'
19105 5' -64.8 NC_004684.1 + 5217 0.71 0.162026
Target:  5'- uGCuCCaGGUGAGGccaugguGUCCGCGCGcGGCCGa -3'
miRNA:   3'- cCG-GG-CCACUUC-------CGGGCGUGC-CCGGC- -5'
19105 5' -64.8 NC_004684.1 + 5460 0.68 0.252426
Target:  5'- aGGCCCGGcgGGugccguGGCCCGCACc--CCGc -3'
miRNA:   3'- -CCGGGCCa-CUu-----CCGGGCGUGcccGGC- -5'
19105 5' -64.8 NC_004684.1 + 6673 0.7 0.170794
Target:  5'- uGCCaCGG-GAGuGGCCUGCACaGGUCGa -3'
miRNA:   3'- cCGG-GCCaCUU-CCGGGCGUGcCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 7093 0.66 0.318261
Target:  5'- aGGCCC--UGGAGG-CCGCcgaggacCGGGCCa -3'
miRNA:   3'- -CCGGGccACUUCCgGGCGu------GCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 7309 1.08 0.000209
Target:  5'- uGGCCCGGUGAAGGCCCGCACGGGCCGc -3'
miRNA:   3'- -CCGGGCCACUUCCGGGCGUGCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.