miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19105 5' -64.8 NC_004684.1 + 7309 1.08 0.000209
Target:  5'- uGGCCCGGUGAAGGCCCGCACGGGCCGc -3'
miRNA:   3'- -CCGGGCCACUUCCGGGCGUGCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 60071 0.83 0.018887
Target:  5'- cGGCCCGGc---GGCCCGUGCGGGCCu -3'
miRNA:   3'- -CCGGGCCacuuCCGGGCGUGCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 18728 0.8 0.035275
Target:  5'- uGCCCGGUGAAGGCCUcuccgGCGCGGuGCa- -3'
miRNA:   3'- cCGGGCCACUUCCGGG-----CGUGCC-CGgc -5'
19105 5' -64.8 NC_004684.1 + 43695 0.76 0.067164
Target:  5'- cGCCCaGGuUGGAGGCCaCGCucuggucCGGGCCGa -3'
miRNA:   3'- cCGGG-CC-ACUUCCGG-GCGu------GCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 24156 0.76 0.068973
Target:  5'- cGCuCCGGUGcAGGGUCCGCagGCGGuGCCGc -3'
miRNA:   3'- cCG-GGCCAC-UUCCGGGCG--UGCC-CGGC- -5'
19105 5' -64.8 NC_004684.1 + 16264 0.75 0.076685
Target:  5'- cGCCCGGUGuucgcgccGGGCCCGaCGCGGcGCUu -3'
miRNA:   3'- cCGGGCCACu-------UCCGGGC-GUGCC-CGGc -5'
19105 5' -64.8 NC_004684.1 + 48971 0.75 0.076685
Target:  5'- cGGCcgCCGGUGc--GCCCGC-CGGGCCGc -3'
miRNA:   3'- -CCG--GGCCACuucCGGGCGuGCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 5071 0.75 0.084772
Target:  5'- aGGCcuCCGGcgaugagaucgcGGAGGCCCGCGCGGcGCUGg -3'
miRNA:   3'- -CCG--GGCCa-----------CUUCCGGGCGUGCC-CGGC- -5'
19105 5' -64.8 NC_004684.1 + 1408 0.73 0.105073
Target:  5'- uGGCCagcgaccUGGAGGCCUGC-CGGGCCa -3'
miRNA:   3'- -CCGGgcc----ACUUCCGGGCGuGCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 3521 0.73 0.105073
Target:  5'- gGGCCCGaUGAAGGCCgccacgcgCGCACGuGGCa- -3'
miRNA:   3'- -CCGGGCcACUUCCGG--------GCGUGC-CCGgc -5'
19105 5' -64.8 NC_004684.1 + 22275 0.73 0.107561
Target:  5'- cGCCUGGcGGcggccaAGGCCCGCGCGGcggcgguGCCGa -3'
miRNA:   3'- cCGGGCCaCU------UCCGGGCGUGCC-------CGGC- -5'
19105 5' -64.8 NC_004684.1 + 9439 0.73 0.107841
Target:  5'- cGGCCaUGGUGGAGGCCCugguguuccggGCGCuGGaGCUGg -3'
miRNA:   3'- -CCGG-GCCACUUCCGGG-----------CGUG-CC-CGGC- -5'
19105 5' -64.8 NC_004684.1 + 8996 0.73 0.110678
Target:  5'- cGGCCgGGccAAGGCCuccaCGCGCGGuGCCGu -3'
miRNA:   3'- -CCGGgCCacUUCCGG----GCGUGCC-CGGC- -5'
19105 5' -64.8 NC_004684.1 + 7895 0.73 0.116562
Target:  5'- cGCCCGGUGc---UCCGUugGGGCCGc -3'
miRNA:   3'- cCGGGCCACuuccGGGCGugCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 55281 0.72 0.119304
Target:  5'- aGCCgGGgucGggGGUugcgugauggccgCCGCGCGGGCCa -3'
miRNA:   3'- cCGGgCCa--CuuCCG-------------GGCGUGCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 42776 0.72 0.119612
Target:  5'- -cCCCGGUuuGAGcGGCCUGC-CGGGCCu -3'
miRNA:   3'- ccGGGCCA--CUU-CCGGGCGuGCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 58622 0.72 0.125937
Target:  5'- cGGCCC-GUGgcGGCuggugCCGCGCuGGGCCu -3'
miRNA:   3'- -CCGGGcCACuuCCG-----GGCGUG-CCCGGc -5'
19105 5' -64.8 NC_004684.1 + 12069 0.72 0.127239
Target:  5'- uGGCCgccgagcgcgacgaGGUGcuGGCCCGCGCGgcGGCCa -3'
miRNA:   3'- -CCGGg-------------CCACuuCCGGGCGUGC--CCGGc -5'
19105 5' -64.8 NC_004684.1 + 58273 0.72 0.128883
Target:  5'- uGGCCucggCGGUGAuGGCCCcacggucgaacgcGuCACGGGCCu -3'
miRNA:   3'- -CCGG----GCCACUuCCGGG-------------C-GUGCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 51093 0.72 0.135659
Target:  5'- cGGCCCGGUcugauacgacaguGAAGcGCCgCGU-CGGGCCc -3'
miRNA:   3'- -CCGGGCCA-------------CUUC-CGG-GCGuGCCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.