miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19105 5' -64.8 NC_004684.1 + 23563 0.7 0.175117
Target:  5'- cGGCCUGGaca--GCCUGC-CGGGCCGc -3'
miRNA:   3'- -CCGGGCCacuucCGGGCGuGCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 26446 0.71 0.158393
Target:  5'- uGGCCCGGUGuacGG-CgGCACGccuGGCCGc -3'
miRNA:   3'- -CCGGGCCACuu-CCgGgCGUGC---CCGGC- -5'
19105 5' -64.8 NC_004684.1 + 5217 0.71 0.162026
Target:  5'- uGCuCCaGGUGAGGccaugguGUCCGCGCGcGGCCGa -3'
miRNA:   3'- cCG-GG-CCACUUC-------CGGGCGUGC-CCGGC- -5'
19105 5' -64.8 NC_004684.1 + 36934 0.71 0.162434
Target:  5'- aGGCCgGGUGGAcacGCCUGCugGuGGUCa -3'
miRNA:   3'- -CCGGgCCACUUc--CGGGCGugC-CCGGc -5'
19105 5' -64.8 NC_004684.1 + 39108 0.7 0.166567
Target:  5'- -aCCCGGUGAccgGGuacGCCUGCGCGgGGUCGg -3'
miRNA:   3'- ccGGGCCACU---UC---CGGGCGUGC-CCGGC- -5'
19105 5' -64.8 NC_004684.1 + 64961 0.7 0.166567
Target:  5'- uGGCCCGGUucAGGUcgaugaCCGCgacGCGGGUCu -3'
miRNA:   3'- -CCGGGCCAcuUCCG------GGCG---UGCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 6673 0.7 0.170794
Target:  5'- uGCCaCGG-GAGuGGCCUGCACaGGUCGa -3'
miRNA:   3'- cCGG-GCCaCUU-CCGGGCGUGcCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 55568 0.7 0.175117
Target:  5'- uGGCCCGGUGGccggGGGUCCagGCaccaagGCGGuGCUGa -3'
miRNA:   3'- -CCGGGCCACU----UCCGGG--CG------UGCC-CGGC- -5'
19105 5' -64.8 NC_004684.1 + 11766 0.7 0.175117
Target:  5'- uGGUucuCCGGUGugguGGCCC-CGUGGGCCGa -3'
miRNA:   3'- -CCG---GGCCACuu--CCGGGcGUGCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 66497 0.71 0.146811
Target:  5'- aGGCCuUGGcGgcGGCCU-CGCGGGCCGc -3'
miRNA:   3'- -CCGG-GCCaCuuCCGGGcGUGCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 29512 0.71 0.146811
Target:  5'- -aCCUGGUGcagaAAGGCCUGCGCuGGUCGg -3'
miRNA:   3'- ccGGGCCAC----UUCCGGGCGUGcCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 4175 0.71 0.143125
Target:  5'- uGGCCCGGUu--GcGCCCG-GCGGGCgCGg -3'
miRNA:   3'- -CCGGGCCAcuuC-CGGGCgUGCCCG-GC- -5'
19105 5' -64.8 NC_004684.1 + 24156 0.76 0.068973
Target:  5'- cGCuCCGGUGcAGGGUCCGCagGCGGuGCCGc -3'
miRNA:   3'- cCG-GGCCAC-UUCCGGGCG--UGCC-CGGC- -5'
19105 5' -64.8 NC_004684.1 + 16264 0.75 0.076685
Target:  5'- cGCCCGGUGuucgcgccGGGCCCGaCGCGGcGCUu -3'
miRNA:   3'- cCGGGCCACu-------UCCGGGC-GUGCC-CGGc -5'
19105 5' -64.8 NC_004684.1 + 22275 0.73 0.107561
Target:  5'- cGCCUGGcGGcggccaAGGCCCGCGCGGcggcgguGCCGa -3'
miRNA:   3'- cCGGGCCaCU------UCCGGGCGUGCC-------CGGC- -5'
19105 5' -64.8 NC_004684.1 + 9439 0.73 0.107841
Target:  5'- cGGCCaUGGUGGAGGCCCugguguuccggGCGCuGGaGCUGg -3'
miRNA:   3'- -CCGG-GCCACUUCCGGG-----------CGUG-CC-CGGC- -5'
19105 5' -64.8 NC_004684.1 + 42776 0.72 0.119612
Target:  5'- -cCCCGGUuuGAGcGGCCUGC-CGGGCCu -3'
miRNA:   3'- ccGGGCCA--CUU-CCGGGCGuGCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 58622 0.72 0.125937
Target:  5'- cGGCCC-GUGgcGGCuggugCCGCGCuGGGCCu -3'
miRNA:   3'- -CCGGGcCACuuCCG-----GGCGUG-CCCGGc -5'
19105 5' -64.8 NC_004684.1 + 12069 0.72 0.127239
Target:  5'- uGGCCgccgagcgcgacgaGGUGcuGGCCCGCGCGgcGGCCa -3'
miRNA:   3'- -CCGGg-------------CCACuuCCGGGCGUGC--CCGGc -5'
19105 5' -64.8 NC_004684.1 + 53160 0.71 0.143125
Target:  5'- gGGUCCGGcgUGAAGGCCUccggGgACaGGCCGa -3'
miRNA:   3'- -CCGGGCC--ACUUCCGGG----CgUGcCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.