miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19110 5' -56.5 NC_004684.1 + 61989 0.66 0.710996
Target:  5'- aGCCaCCCGCacccgccGCGcACAAUCGCGACgGg -3'
miRNA:   3'- gCGGaGGGCG-------UGC-UGUUGGUGUUGgU- -5'
19110 5' -56.5 NC_004684.1 + 61607 0.66 0.722486
Target:  5'- gGCgUCCCGCcCGcACAccacgcACUugGGCCAg -3'
miRNA:   3'- gCGgAGGGCGuGC-UGU------UGGugUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 40016 0.66 0.732841
Target:  5'- aCGCgCUCCgGCGCGAUgguGGCCuuggGCAucauGCCGg -3'
miRNA:   3'- -GCG-GAGGgCGUGCUG---UUGG----UGU----UGGU- -5'
19110 5' -56.5 NC_004684.1 + 22024 0.66 0.690948
Target:  5'- uCGCCgaCCUGaacCGCGACAugCggaACAGCCAg -3'
miRNA:   3'- -GCGGa-GGGC---GUGCUGUugG---UGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 62160 0.66 0.712044
Target:  5'- gGCCUUgCGCAgGGCucgcguGACC-CGGCCGa -3'
miRNA:   3'- gCGGAGgGCGUgCUG------UUGGuGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 16696 0.66 0.701529
Target:  5'- gGCCUgCCGCcugGCGugGugUACGGCa- -3'
miRNA:   3'- gCGGAgGGCG---UGCugUugGUGUUGgu -5'
19110 5' -56.5 NC_004684.1 + 9506 0.66 0.716231
Target:  5'- --aCUCCCGUACGAgcugcgccagcucucCGACCGCGAgCu -3'
miRNA:   3'- gcgGAGGGCGUGCU---------------GUUGGUGUUgGu -5'
19110 5' -56.5 NC_004684.1 + 10456 0.66 0.701529
Target:  5'- gGCCUCCagaaguGCugGAUcGCCACuAUCGa -3'
miRNA:   3'- gCGGAGGg-----CGugCUGuUGGUGuUGGU- -5'
19110 5' -56.5 NC_004684.1 + 1697 0.66 0.721445
Target:  5'- gGCCcgaaCCUGCACcuGGCAggcaccggccaguGCCGCGACCu -3'
miRNA:   3'- gCGGa---GGGCGUG--CUGU-------------UGGUGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 47159 0.66 0.690948
Target:  5'- uGCCcaggagCaCCGUAgCGGCGGCCAgGGCCGc -3'
miRNA:   3'- gCGGa-----G-GGCGU-GCUGUUGGUgUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 56734 0.66 0.722486
Target:  5'- uGCCgcgCCaGCACGGgAACCGgcACCAg -3'
miRNA:   3'- gCGGa--GGgCGUGCUgUUGGUguUGGU- -5'
19110 5' -56.5 NC_004684.1 + 10580 0.66 0.722486
Target:  5'- cCGCCgaUCCggcugguucggCGCGCGAgGugCGCAACUg -3'
miRNA:   3'- -GCGG--AGG-----------GCGUGCUgUugGUGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 65287 0.66 0.695187
Target:  5'- aCGgUUCCCcagaaCGCGACGgcggccucgcugugcACCACGGCCAg -3'
miRNA:   3'- -GCgGAGGGc----GUGCUGU---------------UGGUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 65590 0.66 0.698361
Target:  5'- gGCCUCggucaugagCCGCACGGCGGCguccugguuggcguC-CAGCCAc -3'
miRNA:   3'- gCGGAG---------GGCGUGCUGUUG--------------GuGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 52453 0.66 0.680313
Target:  5'- cCGCCaccgggaugCCCG-ACGGCAugGCCGCcACCAc -3'
miRNA:   3'- -GCGGa--------GGGCgUGCUGU--UGGUGuUGGU- -5'
19110 5' -56.5 NC_004684.1 + 41687 0.66 0.701529
Target:  5'- gGCaacaCCCaGCGCGGCGACgGCGugCGg -3'
miRNA:   3'- gCGga--GGG-CGUGCUGUUGgUGUugGU- -5'
19110 5' -56.5 NC_004684.1 + 21319 0.66 0.680313
Target:  5'- gGCgguggUCCgGCGCGACcGCCGCAuCCGu -3'
miRNA:   3'- gCGg----AGGgCGUGCUGuUGGUGUuGGU- -5'
19110 5' -56.5 NC_004684.1 + 52904 0.66 0.722486
Target:  5'- aGCgUCCggccaGCACGGCGgcgugGCCGCAuuCCAg -3'
miRNA:   3'- gCGgAGGg----CGUGCUGU-----UGGUGUu-GGU- -5'
19110 5' -56.5 NC_004684.1 + 6907 0.66 0.690948
Target:  5'- uGCg-CCUGCGCGACAucCCGCucuACCu -3'
miRNA:   3'- gCGgaGGGCGUGCUGUu-GGUGu--UGGu -5'
19110 5' -56.5 NC_004684.1 + 57264 0.66 0.726638
Target:  5'- cCGUCggCCCGCacagcucggccugugACGGCgAGCCGCAccccgGCCAg -3'
miRNA:   3'- -GCGGa-GGGCG---------------UGCUG-UUGGUGU-----UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.