miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19110 5' -56.5 NC_004684.1 + 65776 0.71 0.422533
Target:  5'- gCGCCggugggcgCgCGCACGGCGACCGauGCCGu -3'
miRNA:   3'- -GCGGa-------GgGCGUGCUGUUGGUguUGGU- -5'
19110 5' -56.5 NC_004684.1 + 37506 0.73 0.305578
Target:  5'- cCGCCaCCCGguUACGACGACCugAugCAc -3'
miRNA:   3'- -GCGGaGGGC--GUGCUGUUGGugUugGU- -5'
19110 5' -56.5 NC_004684.1 + 29435 0.73 0.31305
Target:  5'- gCGCCcggaCCCGCugGGCGACCGguucgacauCGACCu -3'
miRNA:   3'- -GCGGa---GGGCGugCUGUUGGU---------GUUGGu -5'
19110 5' -56.5 NC_004684.1 + 4717 0.73 0.326069
Target:  5'- gGCCUgcuacggccaggacCUCGCGC-ACGGCCACAGCCGc -3'
miRNA:   3'- gCGGA--------------GGGCGUGcUGUUGGUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 58375 0.73 0.327626
Target:  5'- uGCCgcCCCGCACGGC-ACCGCGcguggagGCCu -3'
miRNA:   3'- gCGGa-GGGCGUGCUGuUGGUGU-------UGGu -5'
19110 5' -56.5 NC_004684.1 + 19456 0.72 0.365809
Target:  5'- uGCCcgggcggcgguggCCCGCGCGACAugCGCcccuggAGCCAg -3'
miRNA:   3'- gCGGa------------GGGCGUGCUGUugGUG------UUGGU- -5'
19110 5' -56.5 NC_004684.1 + 36743 0.72 0.386458
Target:  5'- uCGCCgUCCCgGCGCuGACGccGCCAgGGCCGc -3'
miRNA:   3'- -GCGG-AGGG-CGUG-CUGU--UGGUgUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 15539 0.71 0.395285
Target:  5'- gCGCUgaUCCgCGUugGugGACCGgCGACCAu -3'
miRNA:   3'- -GCGG--AGG-GCGugCugUUGGU-GUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 1501 0.71 0.395285
Target:  5'- cCGCCUgUUGCGCGACcACUACGGCg- -3'
miRNA:   3'- -GCGGAgGGCGUGCUGuUGGUGUUGgu -5'
19110 5' -56.5 NC_004684.1 + 57540 0.73 0.305578
Target:  5'- cCGCCUCCagaGCGCGACcGCCGagcugcGCCGg -3'
miRNA:   3'- -GCGGAGGg--CGUGCUGuUGGUgu----UGGU- -5'
19110 5' -56.5 NC_004684.1 + 25390 0.73 0.298244
Target:  5'- aCGCCgCCgCGCacaGCGGCGGCCAguACCAa -3'
miRNA:   3'- -GCGGaGG-GCG---UGCUGUUGGUguUGGU- -5'
19110 5' -56.5 NC_004684.1 + 43843 0.75 0.2426
Target:  5'- uCGUC-CCCGCACGACAGgCGCAucggcagcaugugcGCCAu -3'
miRNA:   3'- -GCGGaGGGCGUGCUGUUgGUGU--------------UGGU- -5'
19110 5' -56.5 NC_004684.1 + 22220 0.8 0.122852
Target:  5'- gGCCUCCCuGCGCGACGGCacccgCGCGAUCAa -3'
miRNA:   3'- gCGGAGGG-CGUGCUGUUG-----GUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 66905 0.78 0.144622
Target:  5'- gGCCUUCgGCGCGGCcuuggcGGCCACAACCu -3'
miRNA:   3'- gCGGAGGgCGUGCUG------UUGGUGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 12090 0.78 0.161038
Target:  5'- uGCUggCCCGCGCGGCGGCCaucacGCAACCc -3'
miRNA:   3'- gCGGa-GGGCGUGCUGUUGG-----UGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 38883 0.77 0.183907
Target:  5'- aCGCCgCCaCGCugGACAGCgACGACUAc -3'
miRNA:   3'- -GCGGaGG-GCGugCUGUUGgUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 66944 0.77 0.188812
Target:  5'- gGCCUCCgGCGCGAUcucGCCcCAGCCGu -3'
miRNA:   3'- gCGGAGGgCGUGCUGu--UGGuGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 12754 0.76 0.193832
Target:  5'- aCGCCcucuuggCCCGCGCGGCugcGCCuGCGGCCAa -3'
miRNA:   3'- -GCGGa------GGGCGUGCUGu--UGG-UGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 33372 0.76 0.204223
Target:  5'- gGUUUCCCGCcguugACGGCGACCACggUCAc -3'
miRNA:   3'- gCGGAGGGCG-----UGCUGUUGGUGuuGGU- -5'
19110 5' -56.5 NC_004684.1 + 6209 0.76 0.209598
Target:  5'- gGCCUCCgGCGCGAUcucGGCCagcuggGCGGCCAg -3'
miRNA:   3'- gCGGAGGgCGUGCUG---UUGG------UGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.