miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19110 5' -56.5 NC_004684.1 + 814 0.68 0.594484
Target:  5'- uCGCCguggcggCCCGCAUGGacACCACAcagAUCAa -3'
miRNA:   3'- -GCGGa------GGGCGUGCUguUGGUGU---UGGU- -5'
19110 5' -56.5 NC_004684.1 + 863 0.68 0.588069
Target:  5'- cCGCCgugCCCGCcgggccgcgcugaagGCGGCccgcgaGGCCGCcGCCAa -3'
miRNA:   3'- -GCGGa--GGGCG---------------UGCUG------UUGGUGuUGGU- -5'
19110 5' -56.5 NC_004684.1 + 1501 0.71 0.395285
Target:  5'- cCGCCUgUUGCGCGACcACUACGGCg- -3'
miRNA:   3'- -GCGGAgGGCGUGCUGuUGGUGUUGgu -5'
19110 5' -56.5 NC_004684.1 + 1626 0.67 0.637438
Target:  5'- gCGCCcaCCggCGCGCGGCGGCCAacgcccgcgaGGCCAa -3'
miRNA:   3'- -GCGGa-GG--GCGUGCUGUUGGUg---------UUGGU- -5'
19110 5' -56.5 NC_004684.1 + 1697 0.66 0.721445
Target:  5'- gGCCcgaaCCUGCACcuGGCAggcaccggccaguGCCGCGACCu -3'
miRNA:   3'- gCGGa---GGGCGUG--CUGU-------------UGGUGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 1797 0.66 0.712044
Target:  5'- aCGCCg-CCGUGCGGCucauGACCGaGGCCAu -3'
miRNA:   3'- -GCGGagGGCGUGCUG----UUGGUgUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 2036 0.68 0.5838
Target:  5'- gGCCagcgcCCUGUuCGugGACUACGGCCAg -3'
miRNA:   3'- gCGGa----GGGCGuGCugUUGGUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 2412 0.67 0.615934
Target:  5'- aGCCgcagaCCCGCgucGCGGucauCGACCugAACCGg -3'
miRNA:   3'- gCGGa----GGGCG---UGCU----GUUGGugUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 2864 0.66 0.722486
Target:  5'- cCGCCgagCCGCugGGCGucaucgguGCCuggugGCAGCCGu -3'
miRNA:   3'- -GCGGag-GGCGugCUGU--------UGG-----UGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 3690 1.08 0.001116
Target:  5'- cCGCCUCCCGCACGACAACCACAACCAc -3'
miRNA:   3'- -GCGGAGGGCGUGCUGUUGGUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 3839 0.66 0.722486
Target:  5'- gGCgUgCCGaC-CGACGACCAC-ACCGa -3'
miRNA:   3'- gCGgAgGGC-GuGCUGUUGGUGuUGGU- -5'
19110 5' -56.5 NC_004684.1 + 3891 0.66 0.722486
Target:  5'- gGCCgcCCUGCugGcGCAGgCGCAGCUg -3'
miRNA:   3'- gCGGa-GGGCGugC-UGUUgGUGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 3947 0.69 0.520763
Target:  5'- aCGUUcUCCGCACcgGACGACCcCGGCCAg -3'
miRNA:   3'- -GCGGaGGGCGUG--CUGUUGGuGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 4232 0.67 0.636363
Target:  5'- uGCg-CCUGCGCGGCGcgcaggaGCCGCAcucgGCCAc -3'
miRNA:   3'- gCGgaGGGCGUGCUGU-------UGGUGU----UGGU- -5'
19110 5' -56.5 NC_004684.1 + 4304 0.66 0.701529
Target:  5'- uCGCCguaauguagugCuuGCACGGCGgcacgguaGCCGCcACCAa -3'
miRNA:   3'- -GCGGa----------GggCGUGCUGU--------UGGUGuUGGU- -5'
19110 5' -56.5 NC_004684.1 + 4492 0.67 0.658924
Target:  5'- gGCCUggCCCGCcguGGCAACgGCAugGCCGg -3'
miRNA:   3'- gCGGA--GGGCGug-CUGUUGgUGU--UGGU- -5'
19110 5' -56.5 NC_004684.1 + 4596 0.73 0.31305
Target:  5'- cCGCCUgcccggcaacCCCGC-CGGgcaggcacCAACCACAACCAc -3'
miRNA:   3'- -GCGGA----------GGGCGuGCU--------GUUGGUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 4717 0.73 0.326069
Target:  5'- gGCCUgcuacggccaggacCUCGCGC-ACGGCCACAGCCGc -3'
miRNA:   3'- gCGGA--------------GGGCGUGcUGUUGGUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 4782 0.7 0.441314
Target:  5'- aCGgCUCCggggUGCGCGACG-CCAUGACCGg -3'
miRNA:   3'- -GCgGAGG----GCGUGCUGUuGGUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 4791 0.67 0.626684
Target:  5'- gCGCCU-CgGCGCGGuggcCGACCGCAACg- -3'
miRNA:   3'- -GCGGAgGgCGUGCU----GUUGGUGUUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.