miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19110 5' -56.5 NC_004684.1 + 3690 1.08 0.001116
Target:  5'- cCGCCUCCCGCACGACAACCACAACCAc -3'
miRNA:   3'- -GCGGAGGGCGUGCUGUUGGUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 19201 0.81 0.090657
Target:  5'- uGCgUgCCCGCGCGAUAGCCugAGCCGg -3'
miRNA:   3'- gCGgA-GGGCGUGCUGUUGGugUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 22220 0.8 0.122852
Target:  5'- gGCCUCCCuGCGCGACGGCacccgCGCGAUCAa -3'
miRNA:   3'- gCGGAGGG-CGUGCUGUUG-----GUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 12502 0.79 0.129748
Target:  5'- cCGCCUCgugCCGCACGuuguGCAggGCCACGACCGu -3'
miRNA:   3'- -GCGGAG---GGCGUGC----UGU--UGGUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 66905 0.78 0.144622
Target:  5'- gGCCUUCgGCGCGGCcuuggcGGCCACAACCu -3'
miRNA:   3'- gCGGAGGgCGUGCUG------UUGGUGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 11273 0.78 0.156783
Target:  5'- gGCCUCCCGUACGuCGuacaaccguGCCACcGCCAc -3'
miRNA:   3'- gCGGAGGGCGUGCuGU---------UGGUGuUGGU- -5'
19110 5' -56.5 NC_004684.1 + 12090 0.78 0.161038
Target:  5'- uGCUggCCCGCGCGGCGGCCaucacGCAACCc -3'
miRNA:   3'- gCGGa-GGGCGUGCUGUUGG-----UGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 38883 0.77 0.183907
Target:  5'- aCGCCgCCaCGCugGACAGCgACGACUAc -3'
miRNA:   3'- -GCGGaGG-GCGugCUGUUGgUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 66944 0.77 0.188812
Target:  5'- gGCCUCCgGCGCGAUcucGCCcCAGCCGu -3'
miRNA:   3'- gCGGAGGgCGUGCUGu--UGGuGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 12754 0.76 0.193832
Target:  5'- aCGCCcucuuggCCCGCGCGGCugcGCCuGCGGCCAa -3'
miRNA:   3'- -GCGGa------GGGCGUGCUGu--UGG-UGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 31977 0.76 0.193832
Target:  5'- uCGCCUCCCGCGCuccucGGCGGCuCAucCGGCCAc -3'
miRNA:   3'- -GCGGAGGGCGUG-----CUGUUG-GU--GUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 33372 0.76 0.204223
Target:  5'- gGUUUCCCGCcguugACGGCGACCACggUCAc -3'
miRNA:   3'- gCGGAGGGCG-----UGCUGUUGGUGuuGGU- -5'
19110 5' -56.5 NC_004684.1 + 6209 0.76 0.209598
Target:  5'- gGCCUCCgGCGCGAUcucGGCCagcuggGCGGCCAg -3'
miRNA:   3'- gCGGAGGgCGUGCUG---UUGG------UGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 55352 0.76 0.209598
Target:  5'- cCGCCUCCUGCugGuCGAgCAUGGCCu -3'
miRNA:   3'- -GCGGAGGGCGugCuGUUgGUGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 48057 0.76 0.220713
Target:  5'- gCGCCUCCCGCu---CGGCCACGGCg- -3'
miRNA:   3'- -GCGGAGGGCGugcuGUUGGUGUUGgu -5'
19110 5' -56.5 NC_004684.1 + 43843 0.75 0.2426
Target:  5'- uCGUC-CCCGCACGACAGgCGCAucggcagcaugugcGCCAu -3'
miRNA:   3'- -GCGGaGGGCGUGCUGUUgGUGU--------------UGGU- -5'
19110 5' -56.5 NC_004684.1 + 12236 0.75 0.244451
Target:  5'- uGCUUCCgGCAgCGGCuccaccGCCACAACCGg -3'
miRNA:   3'- gCGGAGGgCGU-GCUGu-----UGGUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 45012 0.74 0.270272
Target:  5'- aCGCCgCCUGCACGuccaccgccagcGCGACCGCcGCCGc -3'
miRNA:   3'- -GCGGaGGGCGUGC------------UGUUGGUGuUGGU- -5'
19110 5' -56.5 NC_004684.1 + 25390 0.73 0.298244
Target:  5'- aCGCCgCCgCGCacaGCGGCGGCCAguACCAa -3'
miRNA:   3'- -GCGGaGG-GCG---UGCUGUUGGUguUGGU- -5'
19110 5' -56.5 NC_004684.1 + 37506 0.73 0.305578
Target:  5'- cCGCCaCCCGguUACGACGACCugAugCAc -3'
miRNA:   3'- -GCGGaGGGC--GUGCUGUUGGugUugGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.