miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19112 3' -54.5 NC_004684.1 + 38087 0.66 0.845403
Target:  5'- cGUCuUGcGGUAguaGGCACUCGGgUCGGa -3'
miRNA:   3'- -CGGuACaCCAUg--CCGUGGGUCaAGCC- -5'
19112 3' -54.5 NC_004684.1 + 30141 0.66 0.844554
Target:  5'- gGCgGUGUcugggugauauccGGUGCGaGCA-CCGGUUUGGc -3'
miRNA:   3'- -CGgUACA-------------CCAUGC-CGUgGGUCAAGCC- -5'
19112 3' -54.5 NC_004684.1 + 54053 0.66 0.84285
Target:  5'- cGCCGUaggGUuaccagguuuaccgGGUGCGGUgACCCGGgucaaggcgUCGGa -3'
miRNA:   3'- -CGGUA---CA--------------CCAUGCCG-UGGGUCa--------AGCC- -5'
19112 3' -54.5 NC_004684.1 + 63899 0.66 0.819031
Target:  5'- uGCCAgGUGGUccaGGUACCgGGUaaCGGc -3'
miRNA:   3'- -CGGUaCACCAug-CCGUGGgUCAa-GCC- -5'
19112 3' -54.5 NC_004684.1 + 52539 0.66 0.819031
Target:  5'- aGCCAggaGGUGucCGGCA-CCGGUUCGu -3'
miRNA:   3'- -CGGUacaCCAU--GCCGUgGGUCAAGCc -5'
19112 3' -54.5 NC_004684.1 + 41442 0.66 0.809849
Target:  5'- gGCCAgcucgGcGUugGGCACCUuguugccgauGUUCGGc -3'
miRNA:   3'- -CGGUaca--C-CAugCCGUGGGu---------CAAGCC- -5'
19112 3' -54.5 NC_004684.1 + 28572 0.66 0.809849
Target:  5'- cGCCAccggUGUGcgGCGGCugCCuGccggUCGGg -3'
miRNA:   3'- -CGGU----ACACcaUGCCGugGGuCa---AGCC- -5'
19112 3' -54.5 NC_004684.1 + 39945 0.66 0.800488
Target:  5'- uCC-UGUGGUuaugGCGGUGCCCGGagCGc -3'
miRNA:   3'- cGGuACACCA----UGCCGUGGGUCaaGCc -5'
19112 3' -54.5 NC_004684.1 + 49901 0.66 0.800488
Target:  5'- cGCCGgacaUGGUGaucGCGCCCAGgUUGGa -3'
miRNA:   3'- -CGGUac--ACCAUgc-CGUGGGUCaAGCC- -5'
19112 3' -54.5 NC_004684.1 + 22724 0.66 0.800488
Target:  5'- gGCCGUGgcUGGcACGcGCGaCCGGUUCGu -3'
miRNA:   3'- -CGGUAC--ACCaUGC-CGUgGGUCAAGCc -5'
19112 3' -54.5 NC_004684.1 + 65027 0.66 0.800488
Target:  5'- gGCCAUGUcGaugGCGGCcacgaACUCAGggCGGc -3'
miRNA:   3'- -CGGUACAcCa--UGCCG-----UGGGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 53523 0.66 0.799542
Target:  5'- gGCCcaggacgGUGUcgucGGUGCGGCguGCCUGGauUUCGGa -3'
miRNA:   3'- -CGG-------UACA----CCAUGCCG--UGGGUC--AAGCC- -5'
19112 3' -54.5 NC_004684.1 + 48376 0.67 0.790956
Target:  5'- uGCCgGUGUGGUGCacgaucaGCACCCcGgcgUUGGu -3'
miRNA:   3'- -CGG-UACACCAUGc------CGUGGGuCa--AGCC- -5'
19112 3' -54.5 NC_004684.1 + 64907 0.67 0.781266
Target:  5'- aUCA-GUGGgucuugGCGGCgACCCAGguggCGGc -3'
miRNA:   3'- cGGUaCACCa-----UGCCG-UGGGUCaa--GCC- -5'
19112 3' -54.5 NC_004684.1 + 57040 0.67 0.781266
Target:  5'- gGUCAcgGUGGgccACGGCA-CCAGcgCGGu -3'
miRNA:   3'- -CGGUa-CACCa--UGCCGUgGGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 1388 0.67 0.771426
Target:  5'- uCCggGUGGgGCGGCGgcuaCCGGUaCGGg -3'
miRNA:   3'- cGGuaCACCaUGCCGUg---GGUCAaGCC- -5'
19112 3' -54.5 NC_004684.1 + 55927 0.67 0.771426
Target:  5'- gGCCGUccucggugaccGUGGUGCGcGUcgGCCCGGUcagcucCGGg -3'
miRNA:   3'- -CGGUA-----------CACCAUGC-CG--UGGGUCAa-----GCC- -5'
19112 3' -54.5 NC_004684.1 + 64668 0.67 0.755398
Target:  5'- gGCCGUGcGGUGuggcgcacuugccccCGGCACcggCCAGgcCGGg -3'
miRNA:   3'- -CGGUACaCCAU---------------GCCGUG---GGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 28056 0.67 0.75134
Target:  5'- uGCCG-GUGGU-CGGC-CCCGG--CGGu -3'
miRNA:   3'- -CGGUaCACCAuGCCGuGGGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 14098 0.67 0.75134
Target:  5'- aCCggGUGGUGUGGCucagcCCCGGUgggUGGg -3'
miRNA:   3'- cGGuaCACCAUGCCGu----GGGUCAa--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.