miRNA display CGI


Results 1 - 20 of 407 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19114 5' -58.7 NC_004684.1 + 11152 0.66 0.569243
Target:  5'- uCGCGCCGucgguggACCUGGcCGCCAgcgaguGGGUCa -3'
miRNA:   3'- cGCGUGGU-------UGGGCCaGUGGU------UCCGGc -5'
19114 5' -58.7 NC_004684.1 + 17337 0.66 0.60172
Target:  5'- --cCGCCAguccACCCGGUCaaaagggaguGCgGAGGCCu -3'
miRNA:   3'- cgcGUGGU----UGGGCCAG----------UGgUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 49531 0.66 0.570285
Target:  5'- cGUGCACCcggcgguguGCgCGGUgGCCGacuucGGGCUGg -3'
miRNA:   3'- -CGCGUGGu--------UGgGCCAgUGGU-----UCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 12018 0.66 0.591207
Target:  5'- uCGCGgCGGC--GGUgGCCAAGGCCa -3'
miRNA:   3'- cGCGUgGUUGggCCAgUGGUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 43607 0.66 0.580727
Target:  5'- uUGCGgugaaCAGCCCGGcCACgGuguGGCCGa -3'
miRNA:   3'- cGCGUg----GUUGGGCCaGUGgUu--CCGGC- -5'
19114 5' -58.7 NC_004684.1 + 61288 0.66 0.569243
Target:  5'- aGCuGCGCCGGgucgauuUCCGGcagCACCGccgccGGGCCGc -3'
miRNA:   3'- -CG-CGUGGUU-------GGGCCa--GUGGU-----UCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 11951 0.66 0.60172
Target:  5'- -gGuCGCCAGCCUGG-CACCugcGGcGCCa -3'
miRNA:   3'- cgC-GUGGUUGGGCCaGUGGu--UC-CGGc -5'
19114 5' -58.7 NC_004684.1 + 38462 0.66 0.57968
Target:  5'- gGCGCgaucaccGCCGACaaggcaggcaCCGGcgUCAgCAAGGCCa -3'
miRNA:   3'- -CGCG-------UGGUUG----------GGCC--AGUgGUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 24778 0.66 0.591207
Target:  5'- -gGCACCGGgCCgcuGGUCgauacgGCCAAGGCgGu -3'
miRNA:   3'- cgCGUGGUUgGG---CCAG------UGGUUCCGgC- -5'
19114 5' -58.7 NC_004684.1 + 2080 0.66 0.598563
Target:  5'- aGCGCGCCAGCUCGcaacugguggcgcagCACUAcGGCgCGg -3'
miRNA:   3'- -CGCGUGGUUGGGCca-------------GUGGUuCCG-GC- -5'
19114 5' -58.7 NC_004684.1 + 19398 0.66 0.591207
Target:  5'- gGUGCugUGGgcguucaCCGGUCGCCAGuucGGCCu -3'
miRNA:   3'- -CGCGugGUUg------GGCCAGUGGUU---CCGGc -5'
19114 5' -58.7 NC_004684.1 + 58388 0.66 0.595409
Target:  5'- -gGCACCGcgcguggaggccuugGCCCGGcCGCCGGaaccccGCCGg -3'
miRNA:   3'- cgCGUGGU---------------UGGGCCaGUGGUUc-----CGGC- -5'
19114 5' -58.7 NC_004684.1 + 36773 0.66 0.570285
Target:  5'- nGCGCccgguGCCGACgCUGGUCGgCGGcGGCuCGg -3'
miRNA:   3'- -CGCG-----UGGUUG-GGCCAGUgGUU-CCG-GC- -5'
19114 5' -58.7 NC_004684.1 + 41902 0.66 0.567161
Target:  5'- cGCGCugGCCGACCgGacgacaucguggccGUgACCAAGGCgGu -3'
miRNA:   3'- -CGCG--UGGUUGGgC--------------CAgUGGUUCCGgC- -5'
19114 5' -58.7 NC_004684.1 + 51779 0.66 0.566121
Target:  5'- cGCGCucgcgguacucguCCAGguaguCCCGGUCcacgGCCA-GGCCGc -3'
miRNA:   3'- -CGCGu------------GGUU-----GGGCCAG----UGGUuCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 52676 0.66 0.60172
Target:  5'- -aGCACCucuuuGACCCGGUUgGCCAGGuCCu -3'
miRNA:   3'- cgCGUGG-----UUGGGCCAG-UGGUUCcGGc -5'
19114 5' -58.7 NC_004684.1 + 64078 0.66 0.611202
Target:  5'- uGCGCACCcACUCGucGUCgcgcucgcgcuguGCCAuGGCCu -3'
miRNA:   3'- -CGCGUGGuUGGGC--CAG-------------UGGUuCCGGc -5'
19114 5' -58.7 NC_004684.1 + 18754 0.66 0.60172
Target:  5'- -aGCACCGAcgaaacaaccCCCGuac-CCGAGGCCGg -3'
miRNA:   3'- cgCGUGGUU----------GGGCcaguGGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 9033 0.66 0.622809
Target:  5'- gGCGgcaACCGGCgCGGcaaCGCCAgcaGGGCCa -3'
miRNA:   3'- -CGCg--UGGUUGgGCCa--GUGGU---UCCGGc -5'
19114 5' -58.7 NC_004684.1 + 27007 0.66 0.570285
Target:  5'- gGCGCGgCGAUCaacagccaGG-CACCGGGuGCCGg -3'
miRNA:   3'- -CGCGUgGUUGGg-------CCaGUGGUUC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.