miRNA display CGI


Results 1 - 20 of 407 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19114 5' -58.7 NC_004684.1 + 2840 1.09 0.000627
Target:  5'- uGCGCACCAACCCGGUCACCAAGGCCGc -3'
miRNA:   3'- -CGCGUGGUUGGGCCAGUGGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 39317 0.84 0.042953
Target:  5'- cGCGCGgCGGCCCGGccacacCGCCGGGGCCGa -3'
miRNA:   3'- -CGCGUgGUUGGGCCa-----GUGGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 14555 0.81 0.065302
Target:  5'- gGCGUACCGcuggacACCUGGUgCGCCGGGGCCa -3'
miRNA:   3'- -CGCGUGGU------UGGGCCA-GUGGUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 11080 0.81 0.072952
Target:  5'- aGCGCGgucuCCAcguCCCGGcgCGCCAGGGCCGg -3'
miRNA:   3'- -CGCGU----GGUu--GGGCCa-GUGGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 353 0.81 0.074995
Target:  5'- uGCGCAgCAGCUCGGUgGCCA-GGCCa -3'
miRNA:   3'- -CGCGUgGUUGGGCCAgUGGUuCCGGc -5'
19114 5' -58.7 NC_004684.1 + 35157 0.8 0.079246
Target:  5'- uGgGCACCAACUCGGUgGCCGAG-CCGg -3'
miRNA:   3'- -CgCGUGGUUGGGCCAgUGGUUCcGGC- -5'
19114 5' -58.7 NC_004684.1 + 42324 0.8 0.079246
Target:  5'- gGC-CACCAACCCGGcCGCCcuGGCCa -3'
miRNA:   3'- -CGcGUGGUUGGGCCaGUGGuuCCGGc -5'
19114 5' -58.7 NC_004684.1 + 56499 0.8 0.08845
Target:  5'- aCGCGCCGACCCGGguggUCACCGgcgucggugAGGUCGa -3'
miRNA:   3'- cGCGUGGUUGGGCC----AGUGGU---------UCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 66161 0.79 0.090906
Target:  5'- gGCG-ACCGACCaGGcCGCCGAGGCCGa -3'
miRNA:   3'- -CGCgUGGUUGGgCCaGUGGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 11461 0.79 0.096012
Target:  5'- cGCGCACCA---CGGUCACCGAggacGGCCGg -3'
miRNA:   3'- -CGCGUGGUuggGCCAGUGGUU----CCGGC- -5'
19114 5' -58.7 NC_004684.1 + 59741 0.79 0.096012
Target:  5'- gGC-CGCCGACCCGGUCACCAc-GCCc -3'
miRNA:   3'- -CGcGUGGUUGGGCCAGUGGUucCGGc -5'
19114 5' -58.7 NC_004684.1 + 64681 0.79 0.101388
Target:  5'- gGCGCACUugccCCCGG-CACCGgccAGGCCGg -3'
miRNA:   3'- -CGCGUGGuu--GGGCCaGUGGU---UCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 6007 0.78 0.107047
Target:  5'- gGCGCACCAucggACgCGGUgGCCuuuAGGCCGc -3'
miRNA:   3'- -CGCGUGGU----UGgGCCAgUGGu--UCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 51500 0.78 0.107047
Target:  5'- -gGCACC-GCCCGGUCACCGccGCCu -3'
miRNA:   3'- cgCGUGGuUGGGCCAGUGGUucCGGc -5'
19114 5' -58.7 NC_004684.1 + 40114 0.78 0.109987
Target:  5'- gGUGCugAUCAGCCCGGUCACCGu-GCCGa -3'
miRNA:   3'- -CGCG--UGGUUGGGCCAGUGGUucCGGC- -5'
19114 5' -58.7 NC_004684.1 + 56874 0.78 0.112697
Target:  5'- aGCGCACCcuGGCCCcgcaccuuggcgaGGagGCCAAGGCCGc -3'
miRNA:   3'- -CGCGUGG--UUGGG-------------CCagUGGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 37665 0.78 0.119265
Target:  5'- -gGCAUCGACCCGGUgCGCCAgguggauuaccuGGGCCu -3'
miRNA:   3'- cgCGUGGUUGGGCCA-GUGGU------------UCCGGc -5'
19114 5' -58.7 NC_004684.1 + 20708 0.78 0.119265
Target:  5'- aCGaCACCGACCCGGUCACCcccgaacccgagGAGcGCCu -3'
miRNA:   3'- cGC-GUGGUUGGGCCAGUGG------------UUC-CGGc -5'
19114 5' -58.7 NC_004684.1 + 12838 0.78 0.122517
Target:  5'- cUGCuGCCGACgUGGUCGCgGAGGCCGa -3'
miRNA:   3'- cGCG-UGGUUGgGCCAGUGgUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 23957 0.77 0.132771
Target:  5'- cCGCACCGACCuCGGccUCGCCG-GGCCu -3'
miRNA:   3'- cGCGUGGUUGG-GCC--AGUGGUuCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.