miRNA display CGI


Results 1 - 20 of 407 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19114 5' -58.7 NC_004684.1 + 21908 0.74 0.212451
Target:  5'- uGCGauaGCCuGGCCCGGUgACCAccGCCGg -3'
miRNA:   3'- -CGCg--UGG-UUGGGCCAgUGGUucCGGC- -5'
19114 5' -58.7 NC_004684.1 + 28250 0.75 0.168439
Target:  5'- aGCGCgguggacccgGCCAGCCUGGU-GCgCGAGGCCGc -3'
miRNA:   3'- -CGCG----------UGGUUGGGCCAgUG-GUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 66660 0.75 0.177454
Target:  5'- -gGCGgCGGCCCGGUCACCGgcGGuGCCc -3'
miRNA:   3'- cgCGUgGUUGGGCCAGUGGU--UC-CGGc -5'
19114 5' -58.7 NC_004684.1 + 44188 0.75 0.18212
Target:  5'- cGCGCGCCAGCaccucgCGGUacuugucgacCCAGGGCCGg -3'
miRNA:   3'- -CGCGUGGUUGg-----GCCAgu--------GGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 13984 0.75 0.190303
Target:  5'- gGCGCagGCCAGCCCGGcCACCuggacacggugcaguGGCCc -3'
miRNA:   3'- -CGCG--UGGUUGGGCCaGUGGuu-------------CCGGc -5'
19114 5' -58.7 NC_004684.1 + 53301 0.75 0.19178
Target:  5'- aGCcaCACC-ACCCGGUCACCcuGGUCGu -3'
miRNA:   3'- -CGc-GUGGuUGGGCCAGUGGuuCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 10379 0.74 0.201886
Target:  5'- cGCGCACC-GCCgGG-UACCA-GGCCGc -3'
miRNA:   3'- -CGCGUGGuUGGgCCaGUGGUuCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 44543 0.74 0.20711
Target:  5'- cCGgACgAACCCGGUCGgCA-GGCCGg -3'
miRNA:   3'- cGCgUGgUUGGGCCAGUgGUuCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 51452 0.74 0.20711
Target:  5'- aGCuCAUgcGCCCGGUgGCCGAGGCCc -3'
miRNA:   3'- -CGcGUGguUGGGCCAgUGGUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 2557 0.76 0.147675
Target:  5'- aGCGCGCggaGGCCU--UCGCCGAGGCCGg -3'
miRNA:   3'- -CGCGUGg--UUGGGccAGUGGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 12838 0.78 0.122517
Target:  5'- cUGCuGCCGACgUGGUCGCgGAGGCCGa -3'
miRNA:   3'- cGCG-UGGUUGgGCCAGUGgUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 37665 0.78 0.119265
Target:  5'- -gGCAUCGACCCGGUgCGCCAgguggauuaccuGGGCCu -3'
miRNA:   3'- cgCGUGGUUGGGCCA-GUGGU------------UCCGGc -5'
19114 5' -58.7 NC_004684.1 + 42324 0.8 0.079246
Target:  5'- gGC-CACCAACCCGGcCGCCcuGGCCa -3'
miRNA:   3'- -CGcGUGGUUGGGCCaGUGGuuCCGGc -5'
19114 5' -58.7 NC_004684.1 + 56499 0.8 0.08845
Target:  5'- aCGCGCCGACCCGGguggUCACCGgcgucggugAGGUCGa -3'
miRNA:   3'- cGCGUGGUUGGGCC----AGUGGU---------UCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 11461 0.79 0.096012
Target:  5'- cGCGCACCA---CGGUCACCGAggacGGCCGg -3'
miRNA:   3'- -CGCGUGGUuggGCCAGUGGUU----CCGGC- -5'
19114 5' -58.7 NC_004684.1 + 59741 0.79 0.096012
Target:  5'- gGC-CGCCGACCCGGUCACCAc-GCCc -3'
miRNA:   3'- -CGcGUGGUUGGGCCAGUGGUucCGGc -5'
19114 5' -58.7 NC_004684.1 + 51500 0.78 0.107047
Target:  5'- -gGCACC-GCCCGGUCACCGccGCCu -3'
miRNA:   3'- cgCGUGGuUGGGCCAGUGGUucCGGc -5'
19114 5' -58.7 NC_004684.1 + 6007 0.78 0.107047
Target:  5'- gGCGCACCAucggACgCGGUgGCCuuuAGGCCGc -3'
miRNA:   3'- -CGCGUGGU----UGgGCCAgUGGu--UCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 56874 0.78 0.112697
Target:  5'- aGCGCACCcuGGCCCcgcaccuuggcgaGGagGCCAAGGCCGc -3'
miRNA:   3'- -CGCGUGG--UUGGG-------------CCagUGGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 20708 0.78 0.119265
Target:  5'- aCGaCACCGACCCGGUCACCcccgaacccgagGAGcGCCu -3'
miRNA:   3'- cGC-GUGGUUGGGCCAGUGG------------UUC-CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.