miRNA display CGI


Results 1 - 20 of 407 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19114 5' -58.7 NC_004684.1 + 139 0.73 0.240955
Target:  5'- aGCGaCGCCAGCCCGGaaaCGCC--GGUCGa -3'
miRNA:   3'- -CGC-GUGGUUGGGCCa--GUGGuuCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 228 0.7 0.365123
Target:  5'- -gGCACCAugCCGuacaUCGCCGccacgaucaucgugcAGGCCGa -3'
miRNA:   3'- cgCGUGGUugGGCc---AGUGGU---------------UCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 284 0.66 0.622809
Target:  5'- cGUGCACaccuGGCacaagaguucgCUGGcCGCCGAGGCCa -3'
miRNA:   3'- -CGCGUGg---UUG-----------GGCCaGUGGUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 353 0.81 0.074995
Target:  5'- uGCGCAgCAGCUCGGUgGCCA-GGCCa -3'
miRNA:   3'- -CGCGUgGUUGGGCCAgUGGUuCCGGc -5'
19114 5' -58.7 NC_004684.1 + 455 0.69 0.431693
Target:  5'- cGCGCAUcguggccguggaCAACCgGGcCAgCGAGGUCGg -3'
miRNA:   3'- -CGCGUG------------GUUGGgCCaGUgGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 457 0.73 0.240355
Target:  5'- uCGCGCCGgagGCCUucgccgagguuguGGcCGCCAAGGCCGc -3'
miRNA:   3'- cGCGUGGU---UGGG-------------CCaGUGGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 493 0.67 0.55989
Target:  5'- gGCaGCACCGAcaacgacacgcuCCUGGagcugCugCAAGGCCu -3'
miRNA:   3'- -CG-CGUGGUU------------GGGCCa----GugGUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 508 0.67 0.539266
Target:  5'- cCGCGCCGAa--GGUCGCCAccGGcGCUGa -3'
miRNA:   3'- cGCGUGGUUgggCCAGUGGU--UC-CGGC- -5'
19114 5' -58.7 NC_004684.1 + 536 0.71 0.340869
Target:  5'- cGUGCugGCCAGCgCGGUCgagGCCGccaccgaggaggacaAGGCCGa -3'
miRNA:   3'- -CGCG--UGGUUGgGCCAG---UGGU---------------UCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 628 0.68 0.498858
Target:  5'- -aGUACCGcGCCgaGGUCGCCGGGGUg- -3'
miRNA:   3'- cgCGUGGU-UGGg-CCAGUGGUUCCGgc -5'
19114 5' -58.7 NC_004684.1 + 678 0.67 0.55989
Target:  5'- cGUGCGCCugauCCuCGGcC-CCGAGGUCa -3'
miRNA:   3'- -CGCGUGGuu--GG-GCCaGuGGUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 727 0.71 0.329957
Target:  5'- uGgGCACCGccggugaCCGGgccgcCGCCGAGGCCa -3'
miRNA:   3'- -CgCGUGGUug-----GGCCa----GUGGUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 881 0.67 0.507839
Target:  5'- cGCGCugaaGgCGGCCCGcgaggccGcCGCCAAGGCCu -3'
miRNA:   3'- -CGCG----UgGUUGGGC-------CaGUGGUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 1025 0.66 0.622809
Target:  5'- --uCACCcccaacACCCGcGUCGCCcuGGCCGc -3'
miRNA:   3'- cgcGUGGu-----UGGGC-CAGUGGuuCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 1239 0.67 0.508841
Target:  5'- uGC-CAgCAACCCGGUCACU--GGaCCa -3'
miRNA:   3'- -CGcGUgGUUGGGCCAGUGGuuCC-GGc -5'
19114 5' -58.7 NC_004684.1 + 1369 0.68 0.450358
Target:  5'- --aCGCCAacACCCuGGccgaCGCCAAGGCCGc -3'
miRNA:   3'- cgcGUGGU--UGGG-CCa---GUGGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 1450 0.67 0.539266
Target:  5'- aGCuGgACC-ACCUGGUCgagACCG-GGCCGg -3'
miRNA:   3'- -CG-CgUGGuUGGGCCAG---UGGUuCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 1488 0.66 0.60172
Target:  5'- gGUGCGgCGGCCCuGGUgGCCAAccugcGcGCCGc -3'
miRNA:   3'- -CGCGUgGUUGGG-CCAgUGGUU-----C-CGGC- -5'
19114 5' -58.7 NC_004684.1 + 1623 0.67 0.508841
Target:  5'- cGCGCGCCca-CCGGcgCGCgGcGGCCa -3'
miRNA:   3'- -CGCGUGGuugGGCCa-GUGgUuCCGGc -5'
19114 5' -58.7 NC_004684.1 + 1635 0.67 0.55989
Target:  5'- gGCGCAaCCGGguaCCGG-CGCCcaaguGGGGCCa -3'
miRNA:   3'- -CGCGU-GGUUg--GGCCaGUGG-----UUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.