miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19119 5' -61.8 NC_004684.1 + 11050 0.66 0.435002
Target:  5'- uGGagGACGCCCGU-CUGGaGgACGGCa -3'
miRNA:   3'- uCCggUUGCGGGCGuGGCC-CaUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 1622 0.66 0.435002
Target:  5'- cGGCaccuGCaCCgGCgcaACCGGGUAcCGGCg -3'
miRNA:   3'- uCCGgu--UGcGGgCG---UGGCCCAU-GCCG- -5'
19119 5' -61.8 NC_004684.1 + 31407 0.66 0.417056
Target:  5'- cAGGCCAacGCGCCCaagaacguggcGUACUGGGagACGcCg -3'
miRNA:   3'- -UCCGGU--UGCGGG-----------CGUGGCCCa-UGCcG- -5'
19119 5' -61.8 NC_004684.1 + 5806 0.66 0.435002
Target:  5'- gAGGUCGggACGUgCCGCACCGuGGaguacaagcugGCGGUg -3'
miRNA:   3'- -UCCGGU--UGCG-GGCGUGGC-CCa----------UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 58348 0.66 0.425973
Target:  5'- uGGCCcugcuGGCGUugCCGCGCCGGuUgccgccccgcACGGCa -3'
miRNA:   3'- uCCGG-----UUGCG--GGCGUGGCCcA----------UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 61671 0.66 0.444141
Target:  5'- cAGGUguGCGCCUGCACgccauUGGcGU-CGGUg -3'
miRNA:   3'- -UCCGguUGCGGGCGUG-----GCC-CAuGCCG- -5'
19119 5' -61.8 NC_004684.1 + 53186 0.66 0.446904
Target:  5'- cAGGCCGAcCGCgCCGCugGCCaggaaugcguccaGGGUGCccagcaccaccacguGGCa -3'
miRNA:   3'- -UCCGGUU-GCG-GGCG--UGG-------------CCCAUG---------------CCG- -5'
19119 5' -61.8 NC_004684.1 + 18850 0.66 0.417056
Target:  5'- cGGGUCGugGUCgGUgACCGGGU--GGCc -3'
miRNA:   3'- -UCCGGUugCGGgCG-UGGCCCAugCCG- -5'
19119 5' -61.8 NC_004684.1 + 64237 0.66 0.444141
Target:  5'- uGGCCucgGCCagGCGCUGGGUGUuGGCg -3'
miRNA:   3'- uCCGGuugCGGg-CGUGGCCCAUG-CCG- -5'
19119 5' -61.8 NC_004684.1 + 15754 0.66 0.417056
Target:  5'- cGGCCAGCaGCUgCGCAgCGGcaccuaucGCGGCg -3'
miRNA:   3'- uCCGGUUG-CGG-GCGUgGCCca------UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 37171 0.66 0.444141
Target:  5'- aGGGCCAcgucGCGCCgaGCAUCGacgcGcGCGGCc -3'
miRNA:   3'- -UCCGGU----UGCGGg-CGUGGCc---CaUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 31222 0.66 0.435002
Target:  5'- uGGCCGACGCCgGUgacgccauuGCCGauguGUucgACGGCc -3'
miRNA:   3'- uCCGGUUGCGGgCG---------UGGCc---CA---UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 40326 0.66 0.417056
Target:  5'- cAGGCaCGACcUCgGCGCUGGGcaggucgcugGCGGCg -3'
miRNA:   3'- -UCCG-GUUGcGGgCGUGGCCCa---------UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 20376 0.66 0.473136
Target:  5'- aAGGCCAgucguuccccgacgGCaCCCgguugaacaccuuccGCAUCGGGUACuGGUg -3'
miRNA:   3'- -UCCGGU--------------UGcGGG---------------CGUGGCCCAUG-CCG- -5'
19119 5' -61.8 NC_004684.1 + 50337 0.66 0.435002
Target:  5'- cAGGCgGGCgGCCUccuugGCAUCGGcaucgGCGGCg -3'
miRNA:   3'- -UCCGgUUG-CGGG-----CGUGGCCca---UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 65327 0.66 0.444141
Target:  5'- cGGCCAGCGCCagGCagGCCacgaugGCGGCc -3'
miRNA:   3'- uCCGGUUGCGGg-CG--UGGccca--UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 15108 0.66 0.417056
Target:  5'- gAGGCCGACcuugCCGuCACCGGG-ACgcugGGCc -3'
miRNA:   3'- -UCCGGUUGcg--GGC-GUGGCCCaUG----CCG- -5'
19119 5' -61.8 NC_004684.1 + 56972 0.66 0.414404
Target:  5'- gAGGCCAACcugugccaguucgaGCgCGUcaccGCCGGGgACGaGCg -3'
miRNA:   3'- -UCCGGUUG--------------CGgGCG----UGGCCCaUGC-CG- -5'
19119 5' -61.8 NC_004684.1 + 17283 0.66 0.444141
Target:  5'- cGG-CGGCGCUgGUuuucugGCCGGGgucGCGGCc -3'
miRNA:   3'- uCCgGUUGCGGgCG------UGGCCCa--UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 65751 0.66 0.445061
Target:  5'- uGGCCucgcgggcguuggcCGCCgCGCGCCGGuGgGCGcGCg -3'
miRNA:   3'- uCCGGuu------------GCGG-GCGUGGCC-CaUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.