miRNA display CGI


Results 1 - 20 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19119 5' -61.8 NC_004684.1 + 318 1.11 0.000227
Target:  5'- gAGGCCAACGCCCGCACCGGGUACGGCg -3'
miRNA:   3'- -UCCGGUUGCGGGCGUGGCCCAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 492 0.67 0.391004
Target:  5'- aAGGCC-GCGCCgaaggcCGCGCCGaaGGUcgccacCGGCg -3'
miRNA:   3'- -UCCGGuUGCGG------GCGUGGC--CCAu-----GCCG- -5'
19119 5' -61.8 NC_004684.1 + 618 0.67 0.39957
Target:  5'- aAGGgCGGCGaguaCCGCGCCGaGGUcgcCGGg -3'
miRNA:   3'- -UCCgGUUGCg---GGCGUGGC-CCAu--GCCg -5'
19119 5' -61.8 NC_004684.1 + 900 0.78 0.074394
Target:  5'- gAGGCCGcCGCcaaggccuagCCGcCACCGGGUgGCGGCg -3'
miRNA:   3'- -UCCGGUuGCG----------GGC-GUGGCCCA-UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 1041 0.7 0.246007
Target:  5'- gGGGCCAgaaAUGgCgGCACCGGuuGUGCuGGCu -3'
miRNA:   3'- -UCCGGU---UGCgGgCGUGGCC--CAUG-CCG- -5'
19119 5' -61.8 NC_004684.1 + 1472 0.69 0.30499
Target:  5'- cGGGCCGGa---CGUGCCcGGUGCGGCg -3'
miRNA:   3'- -UCCGGUUgcggGCGUGGcCCAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 1504 0.67 0.39957
Target:  5'- uGGCCAaccuGCGCgCCGCGCUca--ACGGCg -3'
miRNA:   3'- uCCGGU----UGCG-GGCGUGGcccaUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 1622 0.66 0.435002
Target:  5'- cGGCaccuGCaCCgGCgcaACCGGGUAcCGGCg -3'
miRNA:   3'- uCCGgu--UGcGGgCG---UGGCCCAU-GCCG- -5'
19119 5' -61.8 NC_004684.1 + 1644 0.7 0.270971
Target:  5'- cGGCCAACGCCCGCgagGCCaacuucgUGGCg -3'
miRNA:   3'- uCCGGUUGCGGGCG---UGGcccau--GCCG- -5'
19119 5' -61.8 NC_004684.1 + 2034 0.73 0.164682
Target:  5'- cAGGCCAGCGCCCuguUCGuGGacUACGGCc -3'
miRNA:   3'- -UCCGGUUGCGGGcguGGC-CC--AUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 2118 0.68 0.334496
Target:  5'- gGGGaaCCGugGCCauUGCCGGGUuccugggaGCGGCg -3'
miRNA:   3'- -UCC--GGUugCGGgcGUGGCCCA--------UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 2176 0.7 0.258242
Target:  5'- cGGUCAugGCCCGCgagguGCCGc--ACGGCc -3'
miRNA:   3'- uCCGGUugCGGGCG-----UGGCccaUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 2368 0.76 0.097379
Target:  5'- uGGCCgccaucgacAugGCCaccuuCGCCGGGUGCGGCg -3'
miRNA:   3'- uCCGG---------UugCGGgc---GUGGCCCAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 2439 0.75 0.111254
Target:  5'- aAGGCCGAcauCGCCCGC-CUGGG--CGGCc -3'
miRNA:   3'- -UCCGGUU---GCGGGCGuGGCCCauGCCG- -5'
19119 5' -61.8 NC_004684.1 + 2510 0.75 0.114243
Target:  5'- cGGCCucaacGACGCCCgGCACUGcGGacgcUGCGGCa -3'
miRNA:   3'- uCCGG-----UUGCGGG-CGUGGC-CC----AUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 2954 0.68 0.350014
Target:  5'- gAGGCCAucgGCGCgcugCUGUugCGGGUggccaACGGg -3'
miRNA:   3'- -UCCGGU---UGCG----GGCGugGCCCA-----UGCCg -5'
19119 5' -61.8 NC_004684.1 + 2995 0.66 0.462736
Target:  5'- gAGGCCAucaccGCGCCgUGCACaCaGGUGCugaucaccgaggGGCc -3'
miRNA:   3'- -UCCGGU-----UGCGG-GCGUG-GcCCAUG------------CCG- -5'
19119 5' -61.8 NC_004684.1 + 3171 0.72 0.201813
Target:  5'- gAGGCCAACGCCgUGUcCCaGGUGucgaucCGGCa -3'
miRNA:   3'- -UCCGGUUGCGG-GCGuGGcCCAU------GCCG- -5'
19119 5' -61.8 NC_004684.1 + 3294 0.68 0.361178
Target:  5'- gAGGCCAugGCacaGCGCgagcgcgacgacgagUGGGUGCgcaaGGCg -3'
miRNA:   3'- -UCCGGUugCGgg-CGUG---------------GCCCAUG----CCG- -5'
19119 5' -61.8 NC_004684.1 + 3357 0.71 0.206935
Target:  5'- gAGGCCGACaccgCCGaCACCGaGGUcaagcGCGGCa -3'
miRNA:   3'- -UCCGGUUGcg--GGC-GUGGC-CCA-----UGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.