miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19119 5' -61.8 NC_004684.1 + 59491 0.73 0.148129
Target:  5'- cGGCCAGCgGCCCcaacggaGCACCGGGcGCGuCg -3'
miRNA:   3'- uCCGGUUG-CGGG-------CGUGGCCCaUGCcG- -5'
19119 5' -61.8 NC_004684.1 + 47180 0.75 0.117307
Target:  5'- cGGCCAGgGCcgCCGCugCGcggcgaacGGUGCGGCg -3'
miRNA:   3'- uCCGGUUgCG--GGCGugGC--------CCAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 28557 0.75 0.120447
Target:  5'- cGGUCAccaacAC-CCCGcCACCGGuGUGCGGCg -3'
miRNA:   3'- uCCGGU-----UGcGGGC-GUGGCC-CAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 26986 0.74 0.126963
Target:  5'- cAGGCCggUGCgagCGCGgCGGGcGCGGCg -3'
miRNA:   3'- -UCCGGuuGCGg--GCGUgGCCCaUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 63887 0.74 0.137351
Target:  5'- cGGGCCcagcggugccagGugGUCCagGUACCGGGUaACGGCg -3'
miRNA:   3'- -UCCGG------------UugCGGG--CGUGGCCCA-UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 36768 0.74 0.140984
Target:  5'- aGGGCC-GCGCCCgGUGCCGacgcuGGUcgGCGGCg -3'
miRNA:   3'- -UCCGGuUGCGGG-CGUGGC-----CCA--UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 63729 0.74 0.144328
Target:  5'- cGGGCCAccguacgAUGaCCCgGCACCGGGcggccacuaguuUGCGGCc -3'
miRNA:   3'- -UCCGGU-------UGC-GGG-CGUGGCCC------------AUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 43439 0.74 0.144704
Target:  5'- gAGGCCGAgGUCggUGCGgCGGGcGCGGCa -3'
miRNA:   3'- -UCCGGUUgCGG--GCGUgGCCCaUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 5872 0.74 0.144704
Target:  5'- cAGGCCGGgcagcaccaGCCUG-ACCGGGUgGCGGCg -3'
miRNA:   3'- -UCCGGUUg--------CGGGCgUGGCCCA-UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 22285 0.75 0.117307
Target:  5'- cGGCCAAgGCCCGCGCgGcg-GCGGUg -3'
miRNA:   3'- uCCGGUUgCGGGCGUGgCccaUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 2510 0.75 0.114243
Target:  5'- cGGCCucaacGACGCCCgGCACUGcGGacgcUGCGGCa -3'
miRNA:   3'- uCCGG-----UUGCGGG-CGUGGC-CC----AUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 2439 0.75 0.111254
Target:  5'- aAGGCCGAcauCGCCCGC-CUGGG--CGGCc -3'
miRNA:   3'- -UCCGGUU---GCGGGCGuGGCCCauGCCG- -5'
19119 5' -61.8 NC_004684.1 + 25196 0.82 0.03639
Target:  5'- uGGCCAgGCGCUgGCACCGGGUGgcuucacCGGCa -3'
miRNA:   3'- uCCGGU-UGCGGgCGUGGCCCAU-------GCCG- -5'
19119 5' -61.8 NC_004684.1 + 19528 0.78 0.072405
Target:  5'- uGGCuCAACGCCaGCugCGGGUGCgccgGGCg -3'
miRNA:   3'- uCCG-GUUGCGGgCGugGCCCAUG----CCG- -5'
19119 5' -61.8 NC_004684.1 + 55947 0.77 0.082887
Target:  5'- gAGGCCGACGCcgacgCCGCGCuccagCGGGUcauCGGCg -3'
miRNA:   3'- -UCCGGUUGCG-----GGCGUG-----GCCCAu--GCCG- -5'
19119 5' -61.8 NC_004684.1 + 61537 0.76 0.0923
Target:  5'- aGGcGCUGGCGUgCCGCugguugguCCGGGUGCGGCa -3'
miRNA:   3'- -UC-CGGUUGCG-GGCGu-------GGCCCAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 39118 0.76 0.094807
Target:  5'- cGGGU--ACGCCUGCGCgGGGU-CGGCa -3'
miRNA:   3'- -UCCGguUGCGGGCGUGgCCCAuGCCG- -5'
19119 5' -61.8 NC_004684.1 + 2368 0.76 0.097379
Target:  5'- uGGCCgccaucgacAugGCCaccuuCGCCGGGUGCGGCg -3'
miRNA:   3'- uCCGG---------UugCGGgc---GUGGCCCAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 65455 0.76 0.099218
Target:  5'- cGGCCAccguGCGCCgGUaccaggcccggcagGCCGGGUcCGGCa -3'
miRNA:   3'- uCCGGU----UGCGGgCG--------------UGGCCCAuGCCG- -5'
19119 5' -61.8 NC_004684.1 + 15994 0.75 0.108339
Target:  5'- gAGGCCGaaACGUCCgGCuCCGGGgACGGUg -3'
miRNA:   3'- -UCCGGU--UGCGGG-CGuGGCCCaUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.