miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19119 5' -61.8 NC_004684.1 + 318 1.11 0.000227
Target:  5'- gAGGCCAACGCCCGCACCGGGUACGGCg -3'
miRNA:   3'- -UCCGGUUGCGGGCGUGGCCCAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 28084 0.86 0.017716
Target:  5'- cGGGCCGccgcGCGaCCCGCACCGGGUgguGCGGUu -3'
miRNA:   3'- -UCCGGU----UGC-GGGCGUGGCCCA---UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 13100 0.83 0.03082
Target:  5'- gGGGCCGAUGCgCGCacccccgGCCGGGUgGCGGCg -3'
miRNA:   3'- -UCCGGUUGCGgGCG-------UGGCCCA-UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 25196 0.82 0.03639
Target:  5'- uGGCCAgGCGCUgGCACCGGGUGgcuucacCGGCa -3'
miRNA:   3'- uCCGGU-UGCGGgCGUGGCCCAU-------GCCG- -5'
19119 5' -61.8 NC_004684.1 + 34767 0.79 0.055135
Target:  5'- cGGCgGuguCGUcccacuCCGCACCGGGUACGGCc -3'
miRNA:   3'- uCCGgUu--GCG------GGCGUGGCCCAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 30619 0.79 0.059847
Target:  5'- cGaCCAGCGUCgGCACCGGGcGCGGCc -3'
miRNA:   3'- uCcGGUUGCGGgCGUGGCCCaUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 19774 0.78 0.068579
Target:  5'- aAGGCCGACGCCgaGUACCgacggcGGuGUGCGGCc -3'
miRNA:   3'- -UCCGGUUGCGGg-CGUGG------CC-CAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 45055 0.78 0.070467
Target:  5'- -cGCCAcCGCCUGUACCGGGUgGCGGg -3'
miRNA:   3'- ucCGGUuGCGGGCGUGGCCCA-UGCCg -5'
19119 5' -61.8 NC_004684.1 + 19528 0.78 0.072405
Target:  5'- uGGCuCAACGCCaGCugCGGGUGCgccgGGCg -3'
miRNA:   3'- uCCG-GUUGCGGgCGugGCCCAUG----CCG- -5'
19119 5' -61.8 NC_004684.1 + 900 0.78 0.074394
Target:  5'- gAGGCCGcCGCcaaggccuagCCGcCACCGGGUgGCGGCg -3'
miRNA:   3'- -UCCGGUuGCG----------GGC-GUGGCCCA-UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 10140 0.77 0.080681
Target:  5'- cGGGCCGAcggugcCGCCCGC-CCaGGUGgGGCg -3'
miRNA:   3'- -UCCGGUU------GCGGGCGuGGcCCAUgCCG- -5'
19119 5' -61.8 NC_004684.1 + 55947 0.77 0.082887
Target:  5'- gAGGCCGACGCcgacgCCGCGCuccagCGGGUcauCGGCg -3'
miRNA:   3'- -UCCGGUUGCG-----GGCGUG-----GCCCAu--GCCG- -5'
19119 5' -61.8 NC_004684.1 + 36084 0.77 0.087473
Target:  5'- uGGCUggUcuGCCCGguCACCGaGGUACGGCg -3'
miRNA:   3'- uCCGGuuG--CGGGC--GUGGC-CCAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 61537 0.76 0.0923
Target:  5'- aGGcGCUGGCGUgCCGCugguugguCCGGGUGCGGCa -3'
miRNA:   3'- -UC-CGGUUGCG-GGCGu-------GGCCCAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 39118 0.76 0.094807
Target:  5'- cGGGU--ACGCCUGCGCgGGGU-CGGCa -3'
miRNA:   3'- -UCCGguUGCGGGCGUGgCCCAuGCCG- -5'
19119 5' -61.8 NC_004684.1 + 2368 0.76 0.097379
Target:  5'- uGGCCgccaucgacAugGCCaccuuCGCCGGGUGCGGCg -3'
miRNA:   3'- uCCGG---------UugCGGgc---GUGGCCCAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 65455 0.76 0.099218
Target:  5'- cGGCCAccguGCGCCgGUaccaggcccggcagGCCGGGUcCGGCa -3'
miRNA:   3'- uCCGGU----UGCGGgCG--------------UGGCCCAuGCCG- -5'
19119 5' -61.8 NC_004684.1 + 23400 0.76 0.100017
Target:  5'- uGGCCAACGCa-GCugGCCGGGUACGcccGCg -3'
miRNA:   3'- uCCGGUUGCGggCG--UGGCCCAUGC---CG- -5'
19119 5' -61.8 NC_004684.1 + 15994 0.75 0.108339
Target:  5'- gAGGCCGaaACGUCCgGCuCCGGGgACGGUg -3'
miRNA:   3'- -UCCGGU--UGCGGG-CGuGGCCCaUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 2439 0.75 0.111254
Target:  5'- aAGGCCGAcauCGCCCGC-CUGGG--CGGCc -3'
miRNA:   3'- -UCCGGUU---GCGGGCGuGGCCCauGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.