Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19126 | 5' | -60.8 | NC_004684.1 | + | 11439 | 0.77 | 0.089581 |
Target: 5'- cGCUGGaGCGCGgcgUCGGCGU--CGGCCu -3' miRNA: 3'- aCGACC-CGCGCa--AGCCGCAcgGCUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 53683 | 0.69 | 0.313534 |
Target: 5'- cGcCUGGGuCGgGaugaucUUCGGCGUGCCcgaaccGGCCa -3' miRNA: 3'- aC-GACCC-GCgC------AAGCCGCACGG------CUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 12355 | 0.69 | 0.326915 |
Target: 5'- cGCUGGGCacacuGCGcaccaccUUCGGCuccccugGUGCCGuuuGCCg -3' miRNA: 3'- aCGACCCG-----CGC-------AAGCCG-------CACGGC---UGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 55988 | 0.66 | 0.514149 |
Target: 5'- gGCcGGGUagGUGgUCGGCGUGaacgaGGCCa -3' miRNA: 3'- aCGaCCCG--CGCaAGCCGCACgg---CUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 24990 | 0.74 | 0.164797 |
Target: 5'- cGCgucGGCGCGUuggggUCGGCGggGCCGAUUg -3' miRNA: 3'- aCGac-CCGCGCA-----AGCCGCa-CGGCUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 61354 | 0.73 | 0.173521 |
Target: 5'- aGCUGGGcCGCGa--GGCGcUGgCGGCCu -3' miRNA: 3'- aCGACCC-GCGCaagCCGC-ACgGCUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 14352 | 0.73 | 0.187378 |
Target: 5'- gUGCUGGGCaccGCGca-GGUGUacGCCGACUg -3' miRNA: 3'- -ACGACCCG---CGCaagCCGCA--CGGCUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 56719 | 0.72 | 0.202201 |
Target: 5'- cGUUGaGGCGU--UCGGUGUGCCGGUCg -3' miRNA: 3'- aCGAC-CCGCGcaAGCCGCACGGCUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 6773 | 0.71 | 0.252871 |
Target: 5'- cGCaUGGGCGaCGUgcgcCGG-GUGaCCGGCCu -3' miRNA: 3'- aCG-ACCCGC-GCAa---GCCgCAC-GGCUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 26726 | 0.7 | 0.306281 |
Target: 5'- uUGCUGGccgaGCGCGacUGGCGggGCCaGGCCc -3' miRNA: 3'- -ACGACC----CGCGCaaGCCGCa-CGG-CUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 32908 | 0.71 | 0.259105 |
Target: 5'- ---cGGGgGUGUccUCGGCgGUGCCgGACCg -3' miRNA: 3'- acgaCCCgCGCA--AGCCG-CACGG-CUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 8515 | 0.71 | 0.252871 |
Target: 5'- gUGCUGGGauUGU--GGCGUGCUGugCg -3' miRNA: 3'- -ACGACCCgcGCAagCCGCACGGCugG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 22200 | 0.75 | 0.130246 |
Target: 5'- cGCUGGaGCGCGgcggggUGGUG-GCCGACUu -3' miRNA: 3'- aCGACC-CGCGCaa----GCCGCaCGGCUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 66049 | 0.71 | 0.265463 |
Target: 5'- aGCUuGaGCGCG-UCGGCGUGCgUGAUCc -3' miRNA: 3'- aCGAcC-CGCGCaAGCCGCACG-GCUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 42007 | 0.75 | 0.140948 |
Target: 5'- cGCUGuGCGCGg-CGGCGUaggcGCUGACCg -3' miRNA: 3'- aCGACcCGCGCaaGCCGCA----CGGCUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 54590 | 0.72 | 0.202201 |
Target: 5'- ---cGGGCGCGUcgUCGGCGggggUGCCGuuguCCu -3' miRNA: 3'- acgaCCCGCGCA--AGCCGC----ACGGCu---GG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 57079 | 0.7 | 0.292162 |
Target: 5'- cGUUGcGGCGCGcacaUCGGUGcgGgCGACCu -3' miRNA: 3'- aCGAC-CCGCGCa---AGCCGCa-CgGCUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 40931 | 0.69 | 0.320916 |
Target: 5'- cGCUGu-CGCGgccaGGCGUGCCG-CCg -3' miRNA: 3'- aCGACccGCGCaag-CCGCACGGCuGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 66890 | 0.75 | 0.144691 |
Target: 5'- aGCUccaGGaGCGUGUcguugUCGGUGcUGCCGACCu -3' miRNA: 3'- aCGA---CC-CGCGCA-----AGCCGC-ACGGCUGG- -5' |
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19126 | 5' | -60.8 | NC_004684.1 | + | 38507 | 0.73 | 0.173521 |
Target: 5'- cGCcacGGcGCGcCGUUCGGUGUucccacuauGCCGACCg -3' miRNA: 3'- aCGa--CC-CGC-GCAAGCCGCA---------CGGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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