miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19143 3' -61 NC_004684.1 + 60503 0.66 0.493183
Target:  5'- aGgACGGUGaCCAGCaUGAUCGaCCGCa -3'
miRNA:   3'- -CgUGCCGCcGGUUGcACUGGC-GGCGc -5'
19143 3' -61 NC_004684.1 + 50601 0.66 0.512739
Target:  5'- gGguCGGCGGUCGGCGggucAUCGgCGUGg -3'
miRNA:   3'- -CguGCCGCCGGUUGCac--UGGCgGCGC- -5'
19143 3' -61 NC_004684.1 + 61331 0.66 0.473977
Target:  5'- cGCccuCGGCGGCguAgGUGGCgGCCagGUGa -3'
miRNA:   3'- -CGu--GCCGCCGguUgCACUGgCGG--CGC- -5'
19143 3' -61 NC_004684.1 + 42683 0.66 0.497068
Target:  5'- -gGCGGUGGCCAACcaguucaacgaucugGUcACCGgCGUGa -3'
miRNA:   3'- cgUGCCGCCGGUUG---------------CAcUGGCgGCGC- -5'
19143 3' -61 NC_004684.1 + 3610 0.66 0.473977
Target:  5'- aCugGGCcGCCGAacacgaGUGGCCGaaGCGc -3'
miRNA:   3'- cGugCCGcCGGUUg-----CACUGGCggCGC- -5'
19143 3' -61 NC_004684.1 + 19837 0.66 0.483535
Target:  5'- -gACGGCGGCgCAugccGGuuGCCGCGc -3'
miRNA:   3'- cgUGCCGCCG-GUugcaCUggCGGCGC- -5'
19143 3' -61 NC_004684.1 + 26615 0.66 0.512739
Target:  5'- -gGCGGCGucaucGCCAACGacACCGUcggCGCGg -3'
miRNA:   3'- cgUGCCGC-----CGGUUGCacUGGCG---GCGC- -5'
19143 3' -61 NC_004684.1 + 37195 0.66 0.493183
Target:  5'- aCGCGcGCGGCCAGCugcugGUGugCGUgaGCu -3'
miRNA:   3'- cGUGC-CGCCGGUUG-----CACugGCGg-CGc -5'
19143 3' -61 NC_004684.1 + 44289 0.66 0.483535
Target:  5'- uGCACGGCGucGCCGAacucggcacUGUucuuGCCGCCGUu -3'
miRNA:   3'- -CGUGCCGC--CGGUU---------GCAc---UGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 57614 0.66 0.493183
Target:  5'- uGCACGaGCgguacGGCCAGCcacccgGUGACC-UCGCGu -3'
miRNA:   3'- -CGUGC-CG-----CCGGUUG------CACUGGcGGCGC- -5'
19143 3' -61 NC_004684.1 + 41432 0.66 0.522636
Target:  5'- -gGCGGUGGUgCGGCGguGCCGCCGg- -3'
miRNA:   3'- cgUGCCGCCG-GUUGCacUGGCGGCgc -5'
19143 3' -61 NC_004684.1 + 24731 0.66 0.493183
Target:  5'- aGCugGGCGugcugcGCCAGauuCGUGACCuGCUgGCa -3'
miRNA:   3'- -CGugCCGC------CGGUU---GCACUGG-CGG-CGc -5'
19143 3' -61 NC_004684.1 + 44089 0.66 0.473977
Target:  5'- cGCACauguaaauGCGGuCCAGCGUG-CCGaccaCGCGc -3'
miRNA:   3'- -CGUGc-------CGCC-GGUUGCACuGGCg---GCGC- -5'
19143 3' -61 NC_004684.1 + 57818 0.66 0.483535
Target:  5'- cCACGGCcuGGucCCGGCGgugcUGGCCGCCGg- -3'
miRNA:   3'- cGUGCCG--CC--GGUUGC----ACUGGCGGCgc -5'
19143 3' -61 NC_004684.1 + 1141 0.66 0.50292
Target:  5'- cCACGGCauGCCgGGCGUG-CCGaCCGUGc -3'
miRNA:   3'- cGUGCCGc-CGG-UUGCACuGGC-GGCGC- -5'
19143 3' -61 NC_004684.1 + 58603 0.66 0.493183
Target:  5'- uGCGCGGUgcuuugaucgacGGCC--CGUGGCggcuggUGCCGCGc -3'
miRNA:   3'- -CGUGCCG------------CCGGuuGCACUG------GCGGCGC- -5'
19143 3' -61 NC_004684.1 + 19310 0.66 0.512739
Target:  5'- aGCA-GGaacaGGCCGcauACGccGCCGCCGUGg -3'
miRNA:   3'- -CGUgCCg---CCGGU---UGCacUGGCGGCGC- -5'
19143 3' -61 NC_004684.1 + 62987 0.66 0.473977
Target:  5'- cGCAC-GUGGCCG--GUGGCCGggaaCGCGa -3'
miRNA:   3'- -CGUGcCGCCGGUugCACUGGCg---GCGC- -5'
19143 3' -61 NC_004684.1 + 7461 0.66 0.526616
Target:  5'- cGCACGuGgGGCCGgacaccgacgcugacAagggccgguuCGUGcGCCGCCGCa -3'
miRNA:   3'- -CGUGC-CgCCGGU---------------U----------GCAC-UGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 26390 0.66 0.483535
Target:  5'- -gGCGGCgaucuGGCCAACGccgccACCGgCGCGc -3'
miRNA:   3'- cgUGCCG-----CCGGUUGCac---UGGCgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.