miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19143 3' -61 NC_004684.1 + 361 0.73 0.176101
Target:  5'- aGCuCGGUGGCCAGgccauCGUGgugccggucaggaucACCGCCGUGg -3'
miRNA:   3'- -CGuGCCGCCGGUU-----GCAC---------------UGGCGGCGC- -5'
19143 3' -61 NC_004684.1 + 422 0.69 0.343735
Target:  5'- uGCACuG-GGUCGACGUGgacgaggacACCGCUGCGc -3'
miRNA:   3'- -CGUGcCgCCGGUUGCAC---------UGGCGGCGC- -5'
19143 3' -61 NC_004684.1 + 725 0.67 0.427697
Target:  5'- cCugGGCaccGCCggUGaccgGGCCGCCGCc -3'
miRNA:   3'- cGugCCGc--CGGuuGCa---CUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 867 0.73 0.183419
Target:  5'- cGCGacgaGGaCGGCCAgcACGUGAUccccgCGCCGCGc -3'
miRNA:   3'- -CGUg---CC-GCCGGU--UGCACUG-----GCGGCGC- -5'
19143 3' -61 NC_004684.1 + 881 0.8 0.055508
Target:  5'- cGCGCugaaGGCGGCCcGCGaGGCCGCCGCc -3'
miRNA:   3'- -CGUG----CCGCCGGuUGCaCUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 977 0.7 0.278879
Target:  5'- uGUACGGCGG--GACG-GAcCCGCCGCc -3'
miRNA:   3'- -CGUGCCGCCggUUGCaCU-GGCGGCGc -5'
19143 3' -61 NC_004684.1 + 1071 0.69 0.343735
Target:  5'- gGC-UGGCGGCgCugGACGUGAUCggugaccagGCCGCGa -3'
miRNA:   3'- -CGuGCCGCCG-G--UUGCACUGG---------CGGCGC- -5'
19143 3' -61 NC_004684.1 + 1092 0.69 0.350788
Target:  5'- cGCGCcGCuGCCGucgggcacccgcaACGUGGCCGuCCGCu -3'
miRNA:   3'- -CGUGcCGcCGGU-------------UGCACUGGC-GGCGc -5'
19143 3' -61 NC_004684.1 + 1141 0.66 0.50292
Target:  5'- cCACGGCauGCCgGGCGUG-CCGaCCGUGc -3'
miRNA:   3'- cGUGCCGc-CGG-UUGCACuGGC-GGCGC- -5'
19143 3' -61 NC_004684.1 + 1375 0.66 0.483535
Target:  5'- aCACccUGGCCGACGccaaGGCCGCCGUu -3'
miRNA:   3'- cGUGccGCCGGUUGCa---CUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 1488 0.75 0.127719
Target:  5'- gGUGCGGCGGCCcugGUGGCCaaccugcgcGCCGCGc -3'
miRNA:   3'- -CGUGCCGCCGGuugCACUGG---------CGGCGC- -5'
19143 3' -61 NC_004684.1 + 1637 0.75 0.134593
Target:  5'- cGCGCGGCGGCCAACGc--CCGCgaggccaacuuCGUGg -3'
miRNA:   3'- -CGUGCCGCCGGUUGCacuGGCG-----------GCGC- -5'
19143 3' -61 NC_004684.1 + 1804 0.66 0.50292
Target:  5'- cGUGCGGCucaugaccgaGGCCAugGcGGCUGaCCuGCGg -3'
miRNA:   3'- -CGUGCCG----------CCGGUugCaCUGGC-GG-CGC- -5'
19143 3' -61 NC_004684.1 + 1948 0.73 0.174313
Target:  5'- cGCACGGUGGCC-GCGc-GCCGCaCGCc -3'
miRNA:   3'- -CGUGCCGCCGGuUGCacUGGCG-GCGc -5'
19143 3' -61 NC_004684.1 + 2008 0.67 0.427697
Target:  5'- aGCGCcuggguGGgGGUCcGCGaUGACCGUCGCc -3'
miRNA:   3'- -CGUG------CCgCCGGuUGC-ACUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 2072 0.69 0.343735
Target:  5'- uGCcUGGCgcuGGCCGugGUGcacagcgaggccGCCGUCGCGu -3'
miRNA:   3'- -CGuGCCG---CCGGUugCAC------------UGGCGGCGC- -5'
19143 3' -61 NC_004684.1 + 2265 0.73 0.178814
Target:  5'- aGCGCGGCGGCgGGCauuGCCGCCaGCc -3'
miRNA:   3'- -CGUGCCGCCGgUUGcacUGGCGG-CGc -5'
19143 3' -61 NC_004684.1 + 2456 0.71 0.247258
Target:  5'- cCugGGCGGCCAGCucGGCgUGCCGUa -3'
miRNA:   3'- cGugCCGCCGGUUGcaCUG-GCGGCGc -5'
19143 3' -61 NC_004684.1 + 2630 0.66 0.512739
Target:  5'- -gGCGGUGGCCAACGcaUGAgCGa-GCu -3'
miRNA:   3'- cgUGCCGCCGGUUGC--ACUgGCggCGc -5'
19143 3' -61 NC_004684.1 + 2976 0.68 0.384199
Target:  5'- uGCG-GGUGGCCAACGgguugaGGCCaucaCCGCGc -3'
miRNA:   3'- -CGUgCCGCCGGUUGCa-----CUGGc---GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.