miRNA display CGI


Results 1 - 20 of 287 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19143 3' -61 NC_004684.1 + 11664 1.09 0.000415
Target:  5'- aGCACGGCGGCCAACGUGACCGCCGCGc -3'
miRNA:   3'- -CGUGCCGCCGGUUGCACUGGCGGCGC- -5'
19143 3' -61 NC_004684.1 + 55723 0.86 0.022938
Target:  5'- uGCGCGGCGGUC-ACGuUGGCCGCCGUGc -3'
miRNA:   3'- -CGUGCCGCCGGuUGC-ACUGGCGGCGC- -5'
19143 3' -61 NC_004684.1 + 42209 0.85 0.02425
Target:  5'- aGC-UGGUGGCCGACGUGGCCGCCGg- -3'
miRNA:   3'- -CGuGCCGCCGGUUGCACUGGCGGCgc -5'
19143 3' -61 NC_004684.1 + 42856 0.84 0.032903
Target:  5'- aGCGCGGUggGGCCAACcaGGCCGCCGCa -3'
miRNA:   3'- -CGUGCCG--CCGGUUGcaCUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 21319 0.82 0.039922
Target:  5'- -gGCGGUGGuCCGGCGcGACCGCCGCa -3'
miRNA:   3'- cgUGCCGCC-GGUUGCaCUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 28892 0.81 0.051131
Target:  5'- -aACGGCGcGCCGugGcGACCGCCGCu -3'
miRNA:   3'- cgUGCCGC-CGGUugCaCUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 881 0.8 0.055508
Target:  5'- cGCGCugaaGGCGGCCcGCGaGGCCGCCGCc -3'
miRNA:   3'- -CGUG----CCGCCGGuUGCaCUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 18430 0.8 0.057047
Target:  5'- cGCAcCGGCGGCCGACGUGGCUcCCGa- -3'
miRNA:   3'- -CGU-GCCGCCGGUUGCACUGGcGGCgc -5'
19143 3' -61 NC_004684.1 + 49547 0.8 0.061914
Target:  5'- uGCGCGGUGGCCGacuucgggcugGCGUGGCCuucGCCuGCGg -3'
miRNA:   3'- -CGUGCCGCCGGU-----------UGCACUGG---CGG-CGC- -5'
19143 3' -61 NC_004684.1 + 47175 0.79 0.070929
Target:  5'- -aGCGGCGGCCAg---GGCCGCCGCu -3'
miRNA:   3'- cgUGCCGCCGGUugcaCUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 20215 0.78 0.079038
Target:  5'- cGCAgCGGCGGCCc---UGGCCGCCGCu -3'
miRNA:   3'- -CGU-GCCGCCGGuugcACUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 40927 0.78 0.083418
Target:  5'- gGCACGcugucGCGGCCAgGCGUG-CCGCCGUa -3'
miRNA:   3'- -CGUGC-----CGCCGGU-UGCACuGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 39317 0.77 0.095402
Target:  5'- cGCGCGGCGGcCCGGCcacACCGCCGgGg -3'
miRNA:   3'- -CGUGCCGCC-GGUUGcacUGGCGGCgC- -5'
19143 3' -61 NC_004684.1 + 6161 0.76 0.109002
Target:  5'- -gGCGGCGGCCAGCGUG-CgGCgGUa -3'
miRNA:   3'- cgUGCCGCCGGUUGCACuGgCGgCGc -5'
19143 3' -61 NC_004684.1 + 57062 0.76 0.110166
Target:  5'- aGCGCGGUGGCaggcaccaccuggaaCGAgGUGGCCGcCCGCa -3'
miRNA:   3'- -CGUGCCGCCG---------------GUUgCACUGGC-GGCGc -5'
19143 3' -61 NC_004684.1 + 54607 0.76 0.114937
Target:  5'- cGCGCGuGCGcGCguACGUGugCGCgCGCGa -3'
miRNA:   3'- -CGUGC-CGC-CGguUGCACugGCG-GCGC- -5'
19143 3' -61 NC_004684.1 + 61464 0.76 0.118016
Target:  5'- cGCcCGGUGGCCAGCGcGGCCaGCCGg- -3'
miRNA:   3'- -CGuGCCGCCGGUUGCaCUGG-CGGCgc -5'
19143 3' -61 NC_004684.1 + 66504 0.76 0.121171
Target:  5'- -gGCGGCGGCCucGCG-GGCCGCCuucagcGCGg -3'
miRNA:   3'- cgUGCCGCCGGu-UGCaCUGGCGG------CGC- -5'
19143 3' -61 NC_004684.1 + 23000 0.76 0.121171
Target:  5'- -aACGGCcugGGCCGAC-UGGCCGCCGuCGg -3'
miRNA:   3'- cgUGCCG---CCGGUUGcACUGGCGGC-GC- -5'
19143 3' -61 NC_004684.1 + 1488 0.75 0.127719
Target:  5'- gGUGCGGCGGCCcugGUGGCCaaccugcgcGCCGCGc -3'
miRNA:   3'- -CGUGCCGCCGGuugCACUGG---------CGGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.