miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19143 3' -61 NC_004684.1 + 15133 0.74 0.169912
Target:  5'- cGCugGGCcugauccacGCCAGCGcgcagcUGGCCGCCGCc -3'
miRNA:   3'- -CGugCCGc--------CGGUUGC------ACUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 66504 0.76 0.121171
Target:  5'- -gGCGGCGGCCucGCG-GGCCGCCuucagcGCGg -3'
miRNA:   3'- cgUGCCGCCGGu-UGCaCUGGCGG------CGC- -5'
19143 3' -61 NC_004684.1 + 65889 0.75 0.131115
Target:  5'- aGCGCGGCgcgcagguuGGCCAccagGGCCGCCGCa -3'
miRNA:   3'- -CGUGCCG---------CCGGUugcaCUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 40094 0.74 0.149371
Target:  5'- cCGCaGCGGCCGAucuCGUGGCCGuaGCGg -3'
miRNA:   3'- cGUGcCGCCGGUU---GCACUGGCggCGC- -5'
19143 3' -61 NC_004684.1 + 18562 0.74 0.15329
Target:  5'- cGCgACGGCGGCCGAgGUcaaGACCG-CGCu -3'
miRNA:   3'- -CG-UGCCGCCGGUUgCA---CUGGCgGCGc -5'
19143 3' -61 NC_004684.1 + 29671 0.74 0.157302
Target:  5'- uGCGC-GCGGCCGACcaGACCGCgCGUGc -3'
miRNA:   3'- -CGUGcCGCCGGUUGcaCUGGCG-GCGC- -5'
19143 3' -61 NC_004684.1 + 22697 0.74 0.157302
Target:  5'- gGCccCGGCGGCgCAggACGUGGCCaagGCCGUGg -3'
miRNA:   3'- -CGu-GCCGCCG-GU--UGCACUGG---CGGCGC- -5'
19143 3' -61 NC_004684.1 + 37818 0.74 0.160166
Target:  5'- gGCACGGCgcgcccuacacagcGGUCAucucgcugaGCGUGAUgGCCGCGc -3'
miRNA:   3'- -CGUGCCG--------------CCGGU---------UGCACUGgCGGCGC- -5'
19143 3' -61 NC_004684.1 + 63068 0.74 0.161408
Target:  5'- --gUGGCGGCUAcCGUG-CCGCCGUGc -3'
miRNA:   3'- cguGCCGCCGGUuGCACuGGCGGCGC- -5'
19143 3' -61 NC_004684.1 + 23000 0.76 0.121171
Target:  5'- -aACGGCcugGGCCGAC-UGGCCGCCGuCGg -3'
miRNA:   3'- cgUGCCG---CCGGUUGcACUGGCGGC-GC- -5'
19143 3' -61 NC_004684.1 + 54607 0.76 0.114937
Target:  5'- cGCGCGuGCGcGCguACGUGugCGCgCGCGa -3'
miRNA:   3'- -CGUGC-CGC-CGguUGCACugGCG-GCGC- -5'
19143 3' -61 NC_004684.1 + 57062 0.76 0.110166
Target:  5'- aGCGCGGUGGCaggcaccaccuggaaCGAgGUGGCCGcCCGCa -3'
miRNA:   3'- -CGUGCCGCCG---------------GUUgCACUGGC-GGCGc -5'
19143 3' -61 NC_004684.1 + 42209 0.85 0.02425
Target:  5'- aGC-UGGUGGCCGACGUGGCCGCCGg- -3'
miRNA:   3'- -CGuGCCGCCGGUUGCACUGGCGGCgc -5'
19143 3' -61 NC_004684.1 + 42856 0.84 0.032903
Target:  5'- aGCGCGGUggGGCCAACcaGGCCGCCGCa -3'
miRNA:   3'- -CGUGCCG--CCGGUUGcaCUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 21319 0.82 0.039922
Target:  5'- -gGCGGUGGuCCGGCGcGACCGCCGCa -3'
miRNA:   3'- cgUGCCGCC-GGUUGCaCUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 28892 0.81 0.051131
Target:  5'- -aACGGCGcGCCGugGcGACCGCCGCu -3'
miRNA:   3'- cgUGCCGC-CGGUugCaCUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 18430 0.8 0.057047
Target:  5'- cGCAcCGGCGGCCGACGUGGCUcCCGa- -3'
miRNA:   3'- -CGU-GCCGCCGGUUGCACUGGcGGCgc -5'
19143 3' -61 NC_004684.1 + 49547 0.8 0.061914
Target:  5'- uGCGCGGUGGCCGacuucgggcugGCGUGGCCuucGCCuGCGg -3'
miRNA:   3'- -CGUGCCGCCGGU-----------UGCACUGG---CGG-CGC- -5'
19143 3' -61 NC_004684.1 + 47175 0.79 0.070929
Target:  5'- -aGCGGCGGCCAg---GGCCGCCGCu -3'
miRNA:   3'- cgUGCCGCCGGUugcaCUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 6161 0.76 0.109002
Target:  5'- -gGCGGCGGCCAGCGUG-CgGCgGUa -3'
miRNA:   3'- cgUGCCGCCGGUUGCACuGgCGgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.