miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19149 3' -63.7 NC_004684.1 + 14525 0.66 0.345171
Target:  5'- cGguGaccCUGGCCuaacugGCCGaCCGCUACGgACUa -3'
miRNA:   3'- -CguC---GACCGG------CGGC-GGCGGUGCgUGG- -5'
19149 3' -63.7 NC_004684.1 + 6744 0.66 0.337489
Target:  5'- -uGGCUGGcCCGgaGCCGUCGggUGCACg -3'
miRNA:   3'- cgUCGACC-GGCggCGGCGGU--GCGUGg -5'
19149 3' -63.7 NC_004684.1 + 52155 0.66 0.352978
Target:  5'- aGCGGCgGGCCGuaGCUGuCCGgGUaggcgaACCg -3'
miRNA:   3'- -CGUCGaCCGGCggCGGC-GGUgCG------UGG- -5'
19149 3' -63.7 NC_004684.1 + 59416 0.66 0.337489
Target:  5'- aGguGUUGcGCaCG-UGCCGCCugGCgGCCu -3'
miRNA:   3'- -CguCGAC-CG-GCgGCGGCGGugCG-UGG- -5'
19149 3' -63.7 NC_004684.1 + 34757 0.66 0.345171
Target:  5'- -aGGgaGGCCGCCaaugGCCGUUAUGgACUu -3'
miRNA:   3'- cgUCgaCCGGCGG----CGGCGGUGCgUGG- -5'
19149 3' -63.7 NC_004684.1 + 34959 0.66 0.345171
Target:  5'- aGCGGCUGGaCUGgCGCaaCGaCACGCcCCu -3'
miRNA:   3'- -CGUCGACC-GGCgGCG--GCgGUGCGuGG- -5'
19149 3' -63.7 NC_004684.1 + 40222 0.66 0.37714
Target:  5'- cGUGGCcaGGUCGCCGCCGUagCugGUgAUCg -3'
miRNA:   3'- -CGUCGa-CCGGCGGCGGCG--GugCG-UGG- -5'
19149 3' -63.7 NC_004684.1 + 56718 0.66 0.345171
Target:  5'- -aAGCUGGCggUGCUGauGCCGCGCcagcacgggaACCg -3'
miRNA:   3'- cgUCGACCG--GCGGCggCGGUGCG----------UGG- -5'
19149 3' -63.7 NC_004684.1 + 61534 0.66 0.352978
Target:  5'- uGCAggcGCUGGCgUGCCGCUGgUugGU-CCg -3'
miRNA:   3'- -CGU---CGACCG-GCGGCGGCgGugCGuGG- -5'
19149 3' -63.7 NC_004684.1 + 22067 0.66 0.337489
Target:  5'- aCAGuCUGGCUaCCGggacaCCG-CACGCGCCg -3'
miRNA:   3'- cGUC-GACCGGcGGC-----GGCgGUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 23981 0.66 0.345171
Target:  5'- aCGGCUcGCUcaaGCCGUCGCCAgGCcagcaguucGCCg -3'
miRNA:   3'- cGUCGAcCGG---CGGCGGCGGUgCG---------UGG- -5'
19149 3' -63.7 NC_004684.1 + 15873 0.66 0.337489
Target:  5'- aGCAcgUGGCCGCCaGCgGCCcugUGCAgCCg -3'
miRNA:   3'- -CGUcgACCGGCGG-CGgCGGu--GCGU-GG- -5'
19149 3' -63.7 NC_004684.1 + 22356 0.66 0.337489
Target:  5'- gGCGGC-GGCgGCgGCgGUCGCGCugGCg -3'
miRNA:   3'- -CGUCGaCCGgCGgCGgCGGUGCG--UGg -5'
19149 3' -63.7 NC_004684.1 + 11443 0.66 0.352978
Target:  5'- cGgAGCUGaCCGg-GCCGaCGCGCACCa -3'
miRNA:   3'- -CgUCGACcGGCggCGGCgGUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 63444 0.66 0.352978
Target:  5'- aCAGCgUGGUCGCCuucGCCGCC-CaGUuCCg -3'
miRNA:   3'- cGUCG-ACCGGCGG---CGGCGGuG-CGuGG- -5'
19149 3' -63.7 NC_004684.1 + 1271 0.66 0.337489
Target:  5'- cGCuGGCUGGUgGCCauguuCCGgUACGCGCg -3'
miRNA:   3'- -CG-UCGACCGgCGGc----GGCgGUGCGUGg -5'
19149 3' -63.7 NC_004684.1 + 7152 0.66 0.360909
Target:  5'- aGCAGUga-CCGCCaCCgaacaGCCGCGCACg -3'
miRNA:   3'- -CGUCGaccGGCGGcGG-----CGGUGCGUGg -5'
19149 3' -63.7 NC_004684.1 + 46459 0.66 0.352978
Target:  5'- cGCGGUgGGCCaggGCCaCCACGCGCUu -3'
miRNA:   3'- -CGUCGaCCGGcggCGGcGGUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 13311 0.66 0.345171
Target:  5'- aGCAGCUGuaCGaCUuCUGCgACGUGCCg -3'
miRNA:   3'- -CGUCGACcgGC-GGcGGCGgUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 26964 0.66 0.345171
Target:  5'- gGCGG-UGGCCaaCGCCGCCAUcCagGCCg -3'
miRNA:   3'- -CGUCgACCGGcgGCGGCGGUGcG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.