miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19149 3' -63.7 NC_004684.1 + 11622 0.74 0.094309
Target:  5'- -gAGCUGGCCGUCgGCCGCCugaccgucgGCAUCg -3'
miRNA:   3'- cgUCGACCGGCGG-CGGCGGug-------CGUGG- -5'
19149 3' -63.7 NC_004684.1 + 55553 0.77 0.0648
Target:  5'- cGCcGCUGGCCGCCguggcccggugGCCGgggguCCAgGCACCa -3'
miRNA:   3'- -CGuCGACCGGCGG-----------CGGC-----GGUgCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 7494 0.76 0.072178
Target:  5'- -uGGCUGGuuGUCuacgcgcugGCCGCCGCGCGCg -3'
miRNA:   3'- cgUCGACCggCGG---------CGGCGGUGCGUGg -5'
19149 3' -63.7 NC_004684.1 + 26307 0.76 0.074145
Target:  5'- cGCAGCUcggccaGGCCGCCggGCCGCCGauUGCCg -3'
miRNA:   3'- -CGUCGA------CCGGCGG--CGGCGGUgcGUGG- -5'
19149 3' -63.7 NC_004684.1 + 12584 0.75 0.077607
Target:  5'- gGCGGCUaucaacgucauucaGGcCCGCCa-CGCCGCGCACCu -3'
miRNA:   3'- -CGUCGA--------------CC-GGCGGcgGCGGUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 43244 0.75 0.078234
Target:  5'- cCAGCgcgcgGGCCggagagcacgGCCauGUCGCCGCGCACCa -3'
miRNA:   3'- cGUCGa----CCGG----------CGG--CGGCGGUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 26390 0.75 0.082539
Target:  5'- gGCGGCgaucUGGCCaaCGCCGCCaccgGCGCGCUg -3'
miRNA:   3'- -CGUCG----ACCGGcgGCGGCGG----UGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 22630 0.75 0.089421
Target:  5'- uGUGGgaGGCCGCCGCCaGCgGCG-ACCc -3'
miRNA:   3'- -CGUCgaCCGGCGGCGG-CGgUGCgUGG- -5'
19149 3' -63.7 NC_004684.1 + 42858 0.75 0.091835
Target:  5'- cGCGGUggGGCCaaccagGCCGCCGCacgcccggccuCugGCACCg -3'
miRNA:   3'- -CGUCGa-CCGG------CGGCGGCG-----------GugCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 13603 0.77 0.058628
Target:  5'- -gGGCUGGCCggaacucaccgagugGUuccugcgcacguuCGCCGCCGCGCACCu -3'
miRNA:   3'- cgUCGACCGG---------------CG-------------GCGGCGGUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 13271 0.77 0.057996
Target:  5'- aGCGcGCUGGUgGCCGCCGgUggcugguGCGCGCCg -3'
miRNA:   3'- -CGU-CGACCGgCGGCGGCgG-------UGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 3686 0.77 0.056444
Target:  5'- gGCAcGCUGGCaggagauCGCCagcGCCGCCGCGCugGCCg -3'
miRNA:   3'- -CGU-CGACCG-------GCGG---CGGCGGUGCG--UGG- -5'
19149 3' -63.7 NC_004684.1 + 24895 0.81 0.031799
Target:  5'- cGUGGCuacgagaUGGCCGCCGCCGCgaucaGCGCGCUg -3'
miRNA:   3'- -CGUCG-------ACCGGCGGCGGCGg----UGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 47175 0.81 0.031886
Target:  5'- aGCGGC-GGCCaggGCCGCCGCUGCGCGgCg -3'
miRNA:   3'- -CGUCGaCCGG---CGGCGGCGGUGCGUgG- -5'
19149 3' -63.7 NC_004684.1 + 28078 0.8 0.034625
Target:  5'- uGUGGCcgGGCCGCCGCgCGaCC-CGCACCg -3'
miRNA:   3'- -CGUCGa-CCGGCGGCG-GC-GGuGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 11941 0.79 0.039711
Target:  5'- --cGCUGGCCaugGUCGCCaGCCugGCACCu -3'
miRNA:   3'- cguCGACCGG---CGGCGG-CGGugCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 65761 0.79 0.043106
Target:  5'- gGC-GUUGGCCGCCGCgCGCCgguggGCGCGCg -3'
miRNA:   3'- -CGuCGACCGGCGGCG-GCGG-----UGCGUGg -5'
19149 3' -63.7 NC_004684.1 + 24113 0.79 0.044786
Target:  5'- cGCAGCccGGCaCGCCGacgcagcagccguacCCGCUGCGCACCg -3'
miRNA:   3'- -CGUCGa-CCG-GCGGC---------------GGCGGUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 57835 0.78 0.053606
Target:  5'- cGguGCUGGCCGCCGguacCCGCC-CGauuGCCa -3'
miRNA:   3'- -CguCGACCGGCGGC----GGCGGuGCg--UGG- -5'
19149 3' -63.7 NC_004684.1 + 37121 0.78 0.055082
Target:  5'- -gGGCUGGCgUGCCGCCaGCgCACuGCGCCg -3'
miRNA:   3'- cgUCGACCG-GCGGCGG-CG-GUG-CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.