miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19149 3' -63.7 NC_004684.1 + 307 0.82 0.026298
Target:  5'- --cGCUGGCCGCCGaggccaaCGCC-CGCACCg -3'
miRNA:   3'- cguCGACCGGCGGCg------GCGGuGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 478 0.68 0.273993
Target:  5'- -aGGUugUGGCCGCCaagGCCgcGCCGaaggcCGCGCCg -3'
miRNA:   3'- cgUCG--ACCGGCGG---CGG--CGGU-----GCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 694 0.7 0.189895
Target:  5'- cGCAGCgcaaGaCCGCCGCCGggugggaagaCCugGgCACCg -3'
miRNA:   3'- -CGUCGa---CcGGCGGCGGC----------GGugC-GUGG- -5'
19149 3' -63.7 NC_004684.1 + 736 0.73 0.119593
Target:  5'- cCGGUgaccgGGCCGCCGCCgaggccaucgugGCCACcaaggccgcagGCACCa -3'
miRNA:   3'- cGUCGa----CCGGCGGCGG------------CGGUG-----------CGUGG- -5'
19149 3' -63.7 NC_004684.1 + 890 0.77 0.058153
Target:  5'- gGCGGCccgcgaGGCCGCCGCCaaggccuaGCCGC-CACCg -3'
miRNA:   3'- -CGUCGa-----CCGGCGGCGG--------CGGUGcGUGG- -5'
19149 3' -63.7 NC_004684.1 + 1044 0.7 0.199639
Target:  5'- cGCc-CUGGCCGcCCGCCcCgGCGuCACCg -3'
miRNA:   3'- -CGucGACCGGC-GGCGGcGgUGC-GUGG- -5'
19149 3' -63.7 NC_004684.1 + 1082 0.72 0.129342
Target:  5'- aGC-GCUacuacGcGCCGCUGCCGUCGgGCACCc -3'
miRNA:   3'- -CGuCGA-----C-CGGCGGCGGCGGUgCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 1271 0.66 0.337489
Target:  5'- cGCuGGCUGGUgGCCauguuCCGgUACGCGCg -3'
miRNA:   3'- -CG-UCGACCGgCGGc----GGCgGUGCGUGg -5'
19149 3' -63.7 NC_004684.1 + 1493 0.67 0.322501
Target:  5'- gGCGGCccuggUGGCCaacCUGCgCGCCGCGC-UCa -3'
miRNA:   3'- -CGUCG-----ACCGGc--GGCG-GCGGUGCGuGG- -5'
19149 3' -63.7 NC_004684.1 + 1599 0.69 0.231509
Target:  5'- cGguGCacGGCaucgGUCGCCGUgCGCGCGCCc -3'
miRNA:   3'- -CguCGa-CCGg---CGGCGGCG-GUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 1776 0.69 0.231509
Target:  5'- cGUGGCUGGaCGCCaaccaggacGCCGCCGUGCGgCu -3'
miRNA:   3'- -CGUCGACCgGCGG---------CGGCGGUGCGUgG- -5'
19149 3' -63.7 NC_004684.1 + 1948 0.75 0.080359
Target:  5'- cGCAcGgUGGCCGCgCGCCGCacgccaGCGCAgCg -3'
miRNA:   3'- -CGU-CgACCGGCG-GCGGCGg-----UGCGUgG- -5'
19149 3' -63.7 NC_004684.1 + 2077 0.75 0.092817
Target:  5'- gGC-GCUGGCCguggugcacagcgagGCCGCCGUCGCGUucuggggaACCg -3'
miRNA:   3'- -CGuCGACCGG---------------CGGCGGCGGUGCG--------UGG- -5'
19149 3' -63.7 NC_004684.1 + 2149 0.67 0.32103
Target:  5'- aGCGGCguuucugUGGCCGCuCGCguaguggagacaaCGCCGCGUcUCu -3'
miRNA:   3'- -CGUCG-------ACCGGCG-GCG-------------GCGGUGCGuGG- -5'
19149 3' -63.7 NC_004684.1 + 2270 0.73 0.126013
Target:  5'- gGCGGCgGGCauuGCCGCCaGCCugG-GCCa -3'
miRNA:   3'- -CGUCGaCCGg--CGGCGG-CGGugCgUGG- -5'
19149 3' -63.7 NC_004684.1 + 2428 0.69 0.243638
Target:  5'- cGCGGUcaucgaccugaaccgGGCCaCCGcCCGCCAgGCGCUc -3'
miRNA:   3'- -CGUCGa--------------CCGGcGGC-GGCGGUgCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 2606 0.68 0.265023
Target:  5'- aCGGCgUGGUcagcuuCGCCGacagccagaccgaCGCCugGCACCa -3'
miRNA:   3'- cGUCG-ACCG------GCGGCg------------GCGGugCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 2703 0.66 0.368963
Target:  5'- cCGGcCUGGCCGgUGCCGggggCAagUGCGCCa -3'
miRNA:   3'- cGUC-GACCGGCgGCGGCg---GU--GCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 2724 0.66 0.37714
Target:  5'- cGUAcGCaagGuGCCGCUGCgCGCCGacaucgcggUGCGCCa -3'
miRNA:   3'- -CGU-CGa--C-CGGCGGCG-GCGGU---------GCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 3256 0.67 0.329933
Target:  5'- cGCuGCUGGCCugGCCGgacaUCGUgGaCGCACUg -3'
miRNA:   3'- -CGuCGACCGG--CGGC----GGCGgU-GCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.