miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19149 3' -63.7 NC_004684.1 + 15157 1.12 0.000121
Target:  5'- cGCAGCUGGCCGCCGCCGCCACGCACCu -3'
miRNA:   3'- -CGUCGACCGGCGGCGGCGGUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 18205 0.87 0.010256
Target:  5'- -gAGCaGGCCGCCGCCGCCGC-CGCCg -3'
miRNA:   3'- cgUCGaCCGGCGGCGGCGGUGcGUGG- -5'
19149 3' -63.7 NC_004684.1 + 45033 0.82 0.024887
Target:  5'- cCAGCgcgaccGCCGCCGCCGCCGC-CACCg -3'
miRNA:   3'- cGUCGac----CGGCGGCGGCGGUGcGUGG- -5'
19149 3' -63.7 NC_004684.1 + 307 0.82 0.026298
Target:  5'- --cGCUGGCCGCCGaggccaaCGCC-CGCACCg -3'
miRNA:   3'- cguCGACCGGCGGCg------GCGGuGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 15241 0.82 0.027033
Target:  5'- aCAGCUacGGcCCGCCGCUGCCACGCAa- -3'
miRNA:   3'- cGUCGA--CC-GGCGGCGGCGGUGCGUgg -5'
19149 3' -63.7 NC_004684.1 + 61236 0.81 0.027788
Target:  5'- cGCAcGCUGGCCGCCGCCGUCGaaCugCu -3'
miRNA:   3'- -CGU-CGACCGGCGGCGGCGGUgcGugG- -5'
19149 3' -63.7 NC_004684.1 + 24895 0.81 0.031799
Target:  5'- cGUGGCuacgagaUGGCCGCCGCCGCgaucaGCGCGCUg -3'
miRNA:   3'- -CGUCG-------ACCGGCGGCGGCGg----UGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 47175 0.81 0.031886
Target:  5'- aGCGGC-GGCCaggGCCGCCGCUGCGCGgCg -3'
miRNA:   3'- -CGUCGaCCGG---CGGCGGCGGUGCGUgG- -5'
19149 3' -63.7 NC_004684.1 + 20215 0.8 0.033687
Target:  5'- cGCAGCggcGGCCcugGCCGCCGCUACggugcuccuggGCACCg -3'
miRNA:   3'- -CGUCGa--CCGG---CGGCGGCGGUG-----------CGUGG- -5'
19149 3' -63.7 NC_004684.1 + 28078 0.8 0.034625
Target:  5'- uGUGGCcgGGCCGCCGCgCGaCC-CGCACCg -3'
miRNA:   3'- -CGUCGa-CCGGCGGCG-GC-GGuGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 11728 0.8 0.036578
Target:  5'- aGCAGCUGGUgCGCCGCCaggcccuccuCCACGCACg -3'
miRNA:   3'- -CGUCGACCG-GCGGCGGc---------GGUGCGUGg -5'
19149 3' -63.7 NC_004684.1 + 11941 0.79 0.039711
Target:  5'- --cGCUGGCCaugGUCGCCaGCCugGCACCu -3'
miRNA:   3'- cguCGACCGG---CGGCGG-CGGugCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 47063 0.79 0.041601
Target:  5'- -gGGCgacgccgaucucgaUGGCCGCCGCCGCCauggugucgGCGCACUu -3'
miRNA:   3'- cgUCG--------------ACCGGCGGCGGCGG---------UGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 65761 0.79 0.043106
Target:  5'- gGC-GUUGGCCGCCGCgCGCCgguggGCGCGCg -3'
miRNA:   3'- -CGuCGACCGGCGGCG-GCGG-----UGCGUGg -5'
19149 3' -63.7 NC_004684.1 + 24113 0.79 0.044786
Target:  5'- cGCAGCccGGCaCGCCGacgcagcagccguacCCGCUGCGCACCg -3'
miRNA:   3'- -CGUCGa-CCG-GCGGC---------------GGCGGUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 33550 0.78 0.048077
Target:  5'- -uGGUUGGCCccguugccGCCGCCGCCGgGCACa -3'
miRNA:   3'- cgUCGACCGG--------CGGCGGCGGUgCGUGg -5'
19149 3' -63.7 NC_004684.1 + 30598 0.78 0.049405
Target:  5'- cGUAGCUGaccgaGCCGCCGCCGaCCAgcgucgGCACCg -3'
miRNA:   3'- -CGUCGAC-----CGGCGGCGGC-GGUg-----CGUGG- -5'
19149 3' -63.7 NC_004684.1 + 57835 0.78 0.053606
Target:  5'- cGguGCUGGCCGCCGguacCCGCC-CGauuGCCa -3'
miRNA:   3'- -CguCGACCGGCGGC----GGCGGuGCg--UGG- -5'
19149 3' -63.7 NC_004684.1 + 37121 0.78 0.055082
Target:  5'- -gGGCUGGCgUGCCGCCaGCgCACuGCGCCg -3'
miRNA:   3'- cgUCGACCG-GCGGCGG-CG-GUG-CGUGG- -5'
19149 3' -63.7 NC_004684.1 + 3686 0.77 0.056444
Target:  5'- gGCAcGCUGGCaggagauCGCCagcGCCGCCGCGCugGCCg -3'
miRNA:   3'- -CGU-CGACCG-------GCGG---CGGCGGUGCG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.