miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 5' -51.7 NC_004684.1 + 4302 0.66 0.947659
Target:  5'- -gGUCGCCGUaauguaGuGCUUGcACGGCGGc -3'
miRNA:   3'- caUAGCGGCAg-----CuUGAGC-UGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 57873 0.66 0.947659
Target:  5'- --cUCGCgGUCGGaagcuggcgcaGCUCGu--ACGGGa -3'
miRNA:   3'- cauAGCGgCAGCU-----------UGAGCuguUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 47324 0.66 0.947659
Target:  5'- cGUGUCGCCGgugUGGGCgUCGAgcAUGGc -3'
miRNA:   3'- -CAUAGCGGCa--GCUUG-AGCUguUGCCc -5'
19151 5' -51.7 NC_004684.1 + 20482 0.66 0.947659
Target:  5'- ---gCGCaaCGUCGGACUCGACAccaucacgccguAUGGu -3'
miRNA:   3'- cauaGCG--GCAGCUUGAGCUGU------------UGCCc -5'
19151 5' -51.7 NC_004684.1 + 32906 0.66 0.947659
Target:  5'- ---aCGCgGUUGAcCUCGGCGACGc- -3'
miRNA:   3'- cauaGCGgCAGCUuGAGCUGUUGCcc -5'
19151 5' -51.7 NC_004684.1 + 40254 0.66 0.942937
Target:  5'- -aAUCGCCcagcacGUCGAucaGCguccCGGCAACGGc -3'
miRNA:   3'- caUAGCGG------CAGCU---UGa---GCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 49388 0.66 0.937947
Target:  5'- aUGUUGCCGcCGuACUCGGuCAGCGc- -3'
miRNA:   3'- cAUAGCGGCaGCuUGAGCU-GUUGCcc -5'
19151 5' -51.7 NC_004684.1 + 62204 0.66 0.931053
Target:  5'- -cGUUGCCGUCcuGGCcaaccagcgccaccUCGACAuCGGGg -3'
miRNA:   3'- caUAGCGGCAGc-UUG--------------AGCUGUuGCCC- -5'
19151 5' -51.7 NC_004684.1 + 57296 0.66 0.927151
Target:  5'- uUGUCGCCGguguggcUGAGCaccCGGCGcaccACGGGg -3'
miRNA:   3'- cAUAGCGGCa------GCUUGa--GCUGU----UGCCC- -5'
19151 5' -51.7 NC_004684.1 + 60840 0.66 0.927151
Target:  5'- --cUCaCCGUCGAugUCcACGGCGGc -3'
miRNA:   3'- cauAGcGGCAGCUugAGcUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 12073 0.67 0.921344
Target:  5'- ----aGCCGUCGGcgaACUCGAuCGGCaGGc -3'
miRNA:   3'- cauagCGGCAGCU---UGAGCU-GUUGcCC- -5'
19151 5' -51.7 NC_004684.1 + 10 0.67 0.921344
Target:  5'- --uUCGUCGUgGAGC-CGgACAcCGGGg -3'
miRNA:   3'- cauAGCGGCAgCUUGaGC-UGUuGCCC- -5'
19151 5' -51.7 NC_004684.1 + 53848 0.67 0.919549
Target:  5'- -gAUgGCCGccaggcgcagcuccUCGAACUCGucgGCGcACGGGa -3'
miRNA:   3'- caUAgCGGC--------------AGCUUGAGC---UGU-UGCCC- -5'
19151 5' -51.7 NC_004684.1 + 49113 0.67 0.915265
Target:  5'- -gGUCGCCGUCGGcgUCGGCc-UGGa -3'
miRNA:   3'- caUAGCGGCAGCUugAGCUGuuGCCc -5'
19151 5' -51.7 NC_004684.1 + 66343 0.67 0.915265
Target:  5'- gGUGaCGCCGgggCGGGCggccagggCGACG-CGGGu -3'
miRNA:   3'- -CAUaGCGGCa--GCUUGa-------GCUGUuGCCC- -5'
19151 5' -51.7 NC_004684.1 + 13654 0.67 0.915265
Target:  5'- gGUGUUccugGCCGUCGAACcCGGCAccauGCcGGa -3'
miRNA:   3'- -CAUAG----CGGCAGCUUGaGCUGU----UGcCC- -5'
19151 5' -51.7 NC_004684.1 + 24753 0.67 0.914642
Target:  5'- -cAUCGCUGgCGGcaccagcACcggCGGCGGCGGGg -3'
miRNA:   3'- caUAGCGGCaGCU-------UGa--GCUGUUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 11234 0.67 0.908915
Target:  5'- -cGUCGCCGUCG---UCGGCca-GGGc -3'
miRNA:   3'- caUAGCGGCAGCuugAGCUGuugCCC- -5'
19151 5' -51.7 NC_004684.1 + 26716 0.67 0.908915
Target:  5'- -cGUCGCCaccuugcugGcCGAGCgCGACuGGCGGGg -3'
miRNA:   3'- caUAGCGG---------CaGCUUGaGCUG-UUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 33459 0.67 0.908915
Target:  5'- --cUCGCUGUgGucugcCUCGGCGGCGGc -3'
miRNA:   3'- cauAGCGGCAgCuu---GAGCUGUUGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.