miRNA display CGI


Results 1 - 20 of 292 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19155 3' -67.3 NC_004684.1 + 27595 0.66 0.269188
Target:  5'- uUGCCCUCaacgggguGGAGCUuGCCaacagcucacgcguGGUGGCGCa -3'
miRNA:   3'- gGCGGGGG--------CCUCGGcUGG--------------CCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 31087 0.66 0.258302
Target:  5'- gUGCCgCCGaGGGCUGgcaggacGCCGcGCaGGCGCu -3'
miRNA:   3'- gGCGGgGGC-CUCGGC-------UGGC-CG-CCGCG- -5'
19155 3' -67.3 NC_004684.1 + 28570 0.66 0.264911
Target:  5'- cCCGCCaCCGG---UGugCGGCGGCuGCc -3'
miRNA:   3'- -GGCGGgGGCCucgGCugGCCGCCG-CG- -5'
19155 3' -67.3 NC_004684.1 + 22197 0.66 0.271038
Target:  5'- aCCGCCUUCGGA-CUGGCgcaGGUGGCc- -3'
miRNA:   3'- -GGCGGGGGCCUcGGCUGg--CCGCCGcg -5'
19155 3' -67.3 NC_004684.1 + 48433 0.66 0.258897
Target:  5'- aCCGCuCCaCCGccuuGCCGACCucGGUGGC-Cg -3'
miRNA:   3'- -GGCG-GG-GGCcu--CGGCUGG--CCGCCGcG- -5'
19155 3' -67.3 NC_004684.1 + 21964 0.66 0.271038
Target:  5'- aCGCCUCCGacuugcgugguGAGCUGACCcGcGCGGUcCa -3'
miRNA:   3'- gGCGGGGGC-----------CUCGGCUGG-C-CGCCGcG- -5'
19155 3' -67.3 NC_004684.1 + 22416 0.66 0.27042
Target:  5'- aCCaGCCCgCUGGGccucaacgccaucGCCGucgGCgCGGCGGCGa -3'
miRNA:   3'- -GG-CGGG-GGCCU-------------CGGC---UG-GCCGCCGCg -5'
19155 3' -67.3 NC_004684.1 + 22273 0.66 0.258897
Target:  5'- aCCGCCUggcggCGGccaaGGCCcGCgCGGCGGCGg -3'
miRNA:   3'- -GGCGGGg----GCC----UCGGcUG-GCCGCCGCg -5'
19155 3' -67.3 NC_004684.1 + 11952 0.66 0.2637
Target:  5'- gUCGCCagCCUGGcaccugcGGCgccaccgCGACCGGCGGCa- -3'
miRNA:   3'- -GGCGG--GGGCC-------UCG-------GCUGGCCGCCGcg -5'
19155 3' -67.3 NC_004684.1 + 12754 0.66 0.271038
Target:  5'- aCGCCCUCuuGGCCcGCgCGGCuGCGCc -3'
miRNA:   3'- gGCGGGGGccUCGGcUG-GCCGcCGCG- -5'
19155 3' -67.3 NC_004684.1 + 56299 0.66 0.277278
Target:  5'- cCCGgCCCUGGcgcGCCgggacguggaGACCGcGCuGCGCg -3'
miRNA:   3'- -GGCgGGGGCCu--CGG----------CUGGC-CGcCGCG- -5'
19155 3' -67.3 NC_004684.1 + 20234 0.66 0.277278
Target:  5'- gUGCgCCUGGcgcGCCGGuacuacuuCCGGCccGGCGCg -3'
miRNA:   3'- gGCGgGGGCCu--CGGCU--------GGCCG--CCGCG- -5'
19155 3' -67.3 NC_004684.1 + 59856 0.66 0.27352
Target:  5'- aCGCCgCCaCGGcGGCCaggucgguccgGGCagguccaccccgaugCGGCGGCGCa -3'
miRNA:   3'- gGCGG-GG-GCC-UCGG-----------CUG---------------GCCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 50115 0.66 0.258897
Target:  5'- -gGCCCCCaccucgauGGccaGGuuGAUCGGCGG-GCa -3'
miRNA:   3'- ggCGGGGG--------CC---UCggCUGGCCGCCgCG- -5'
19155 3' -67.3 NC_004684.1 + 27965 0.66 0.258897
Target:  5'- gUCGCCgaacagCCCGaGAGUgCGGaguUCGGCGGCGUc -3'
miRNA:   3'- -GGCGG------GGGC-CUCG-GCU---GGCCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 59369 0.66 0.258897
Target:  5'- gCGCacggugUCCUGGAaCCGcCCGGCGGCa- -3'
miRNA:   3'- gGCG------GGGGCCUcGGCuGGCCGCCGcg -5'
19155 3' -67.3 NC_004684.1 + 24943 0.66 0.277278
Target:  5'- cCCGagaauUCCUCGGuGCCGACCcGGCcaCGCu -3'
miRNA:   3'- -GGC-----GGGGGCCuCGGCUGG-CCGccGCG- -5'
19155 3' -67.3 NC_004684.1 + 12121 0.66 0.27042
Target:  5'- cCCGaCCCCGGcugaggagaucAGCCGACUgcuggaaggacguGGCuaauGGCGUg -3'
miRNA:   3'- -GGCgGGGGCC-----------UCGGCUGG-------------CCG----CCGCG- -5'
19155 3' -67.3 NC_004684.1 + 51579 0.66 0.290101
Target:  5'- gCGCCaCCGGGucGCuCGGCgUGGUGGUGUg -3'
miRNA:   3'- gGCGGgGGCCU--CG-GCUG-GCCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 49532 0.66 0.27042
Target:  5'- gUGCaCCCGGcggugugcgcgguGGCCGACUucgGGCuGGCGUg -3'
miRNA:   3'- gGCGgGGGCC-------------UCGGCUGG---CCG-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.