miRNA display CGI


Results 1 - 20 of 292 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19155 3' -67.3 NC_004684.1 + 18340 1.12 0.000086
Target:  5'- gCCGCCCCCGGAGCCGACCGGCGGCGCg -3'
miRNA:   3'- -GGCGGGGGCCUCGGCUGGCCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 55029 0.84 0.012555
Target:  5'- aCCGCCCCCGGuaAGCCaguuaGACCGGgGGCGg -3'
miRNA:   3'- -GGCGGGGGCC--UCGG-----CUGGCCgCCGCg -5'
19155 3' -67.3 NC_004684.1 + 36771 0.81 0.019739
Target:  5'- gCCGCgCCCGGuGCCGACgcugguCGGCGGCGg -3'
miRNA:   3'- -GGCGgGGGCCuCGGCUG------GCCGCCGCg -5'
19155 3' -67.3 NC_004684.1 + 12945 0.8 0.023147
Target:  5'- gCCGucggcaCCCCCGGugcucccGCCGACCGGCGGCagGCa -3'
miRNA:   3'- -GGC------GGGGGCCu------CGGCUGGCCGCCG--CG- -5'
19155 3' -67.3 NC_004684.1 + 12351 0.79 0.028533
Target:  5'- aCCGCCCCCGGucuaacuGGCUuACCGGgGGCGg -3'
miRNA:   3'- -GGCGGGGGCC-------UCGGcUGGCCgCCGCg -5'
19155 3' -67.3 NC_004684.1 + 61315 0.79 0.030969
Target:  5'- aCCGCCgCCGGGccGCCGcccUCGGCGGCGUa -3'
miRNA:   3'- -GGCGGgGGCCU--CGGCu--GGCCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 11433 0.78 0.033521
Target:  5'- uUCGCCaaCCCGGAGCUGACCGgGCcgacGCGCa -3'
miRNA:   3'- -GGCGG--GGGCCUCGGCUGGC-CGc---CGCG- -5'
19155 3' -67.3 NC_004684.1 + 51391 0.78 0.03715
Target:  5'- aCCGUCCCCGGAGCCGGacguuUCGGCcucugccGGUGUc -3'
miRNA:   3'- -GGCGGGGGCCUCGGCU-----GGCCG-------CCGCG- -5'
19155 3' -67.3 NC_004684.1 + 3519 0.78 0.03926
Target:  5'- aUCGCCgaCGGgugGGCCGACCuGGCGGUGCa -3'
miRNA:   3'- -GGCGGggGCC---UCGGCUGG-CCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 64688 0.78 0.03926
Target:  5'- uUGCCCCCGGcaccGGCCaGGCCGGggaugcggugccCGGCGCu -3'
miRNA:   3'- gGCGGGGGCC----UCGG-CUGGCC------------GCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 15514 0.77 0.041379
Target:  5'- -gGCCgCCCGGGGCCGggcGCUGGaGGCGCu -3'
miRNA:   3'- ggCGG-GGGCCUCGGC---UGGCCgCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 18558 0.77 0.045958
Target:  5'- gCCGCCCCCGGAGUacaucaucgaCGGCCuguuggagaacGGCGGCc- -3'
miRNA:   3'- -GGCGGGGGCCUCG----------GCUGG-----------CCGCCGcg -5'
19155 3' -67.3 NC_004684.1 + 19330 0.76 0.047178
Target:  5'- gCCGCCgCCGuGGCCGAgCGGgaGGCGCu -3'
miRNA:   3'- -GGCGGgGGCcUCGGCUgGCCg-CCGCG- -5'
19155 3' -67.3 NC_004684.1 + 47770 0.76 0.048429
Target:  5'- gCGCCCCCGGuagugcgucAGUCGGCCaggauguucucGGCGGCGa -3'
miRNA:   3'- gGCGGGGGCC---------UCGGCUGG-----------CCGCCGCg -5'
19155 3' -67.3 NC_004684.1 + 40950 0.76 0.05238
Target:  5'- gCCGCCguacaCCGG-GCC-ACCGGCGGCGa -3'
miRNA:   3'- -GGCGGg----GGCCuCGGcUGGCCGCCGCg -5'
19155 3' -67.3 NC_004684.1 + 61314 0.75 0.056644
Target:  5'- gCCGCCCCCGGcaucGGCU-ACCaGcGCGGCGUg -3'
miRNA:   3'- -GGCGGGGGCC----UCGGcUGG-C-CGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 59445 0.75 0.056644
Target:  5'- uUGCCCaCCGGugugcGCCGGUCGGCGGCGa -3'
miRNA:   3'- gGCGGG-GGCCu----CGGCUGGCCGCCGCg -5'
19155 3' -67.3 NC_004684.1 + 5592 0.75 0.059672
Target:  5'- cCCGCCUgccgaCGGGGCCGAgCUGGC-GCGCa -3'
miRNA:   3'- -GGCGGGg----GCCUCGGCU-GGCCGcCGCG- -5'
19155 3' -67.3 NC_004684.1 + 19485 0.75 0.059672
Target:  5'- gCGCCCCUGGAGCCaGCCGcugcuGUGGUGg -3'
miRNA:   3'- gGCGGGGGCCUCGGcUGGC-----CGCCGCg -5'
19155 3' -67.3 NC_004684.1 + 13111 0.75 0.059672
Target:  5'- gCGCaCCCCcG-GCCGGgUGGCGGCGCu -3'
miRNA:   3'- gGCG-GGGGcCuCGGCUgGCCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.