miRNA display CGI


Results 1 - 20 of 292 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19155 3' -67.3 NC_004684.1 + 511 0.67 0.229949
Target:  5'- aCGCUCCUGGAGCUgcugcaaGGCCuGGaccCGGCGa -3'
miRNA:   3'- gGCGGGGGCCUCGG-------CUGG-CC---GCCGCg -5'
19155 3' -67.3 NC_004684.1 + 631 0.66 0.282991
Target:  5'- aCCGCgCCgaggucgCCGGGguGCUGuACCgGGUGGUGCg -3'
miRNA:   3'- -GGCG-GG-------GGCCU--CGGC-UGG-CCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 692 0.68 0.204757
Target:  5'- uCgGCCCCgaGGucAGCCG-CCGGUggacggccuGGCGCu -3'
miRNA:   3'- -GgCGGGGg-CC--UCGGCuGGCCG---------CCGCG- -5'
19155 3' -67.3 NC_004684.1 + 868 0.69 0.172938
Target:  5'- gUGCCCgCCGG-GCCGcGCUgaaGGCGGCccGCg -3'
miRNA:   3'- gGCGGG-GGCCuCGGC-UGG---CCGCCG--CG- -5'
19155 3' -67.3 NC_004684.1 + 903 0.68 0.19054
Target:  5'- gCCGCCgCCaaGGccuAGCCGccACCggguGGCGGCGUg -3'
miRNA:   3'- -GGCGGgGG--CC---UCGGC--UGG----CCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 1054 0.74 0.073422
Target:  5'- gCGgCaCCGGuuguGCUGGCUGGCGGCGCu -3'
miRNA:   3'- gGCgGgGGCCu---CGGCUGGCCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 1252 0.71 0.128558
Target:  5'- cCCGgCCCCGGcccagaugcGCUGGCUGGUGGC-Ca -3'
miRNA:   3'- -GGCgGGGGCCu--------CGGCUGGCCGCCGcG- -5'
19155 3' -67.3 NC_004684.1 + 1679 0.68 0.185997
Target:  5'- uUCGCCCaCCaG-GCCGAgCUGGC-GCGCa -3'
miRNA:   3'- -GGCGGG-GGcCuCGGCU-GGCCGcCGCG- -5'
19155 3' -67.3 NC_004684.1 + 1908 0.68 0.199918
Target:  5'- cCCGCaCCugCCGGAcccgGCCuGCCGGgccugguacCGGCGCa -3'
miRNA:   3'- -GGCG-GG--GGCCU----CGGcUGGCC---------GCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 1956 0.67 0.230489
Target:  5'- uUCuCCCCUGGuacuGCUGuCCGGCGGUa- -3'
miRNA:   3'- -GGcGGGGGCCu---CGGCuGGCCGCCGcg -5'
19155 3' -67.3 NC_004684.1 + 2057 0.68 0.19054
Target:  5'- gCCGCCaucguggccugCCUGGcGCUGGCCG-UGGUGCa -3'
miRNA:   3'- -GGCGG-----------GGGCCuCGGCUGGCcGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 2508 0.68 0.209696
Target:  5'- uUCGguaCCCgGGGGCgCGACCGGacaacGCGCa -3'
miRNA:   3'- -GGCg--GGGgCCUCG-GCUGGCCgc---CGCG- -5'
19155 3' -67.3 NC_004684.1 + 2694 0.74 0.077309
Target:  5'- aCCGCauCCCCGGccuGGCCGguGCCGGgGGCa- -3'
miRNA:   3'- -GGCG--GGGGCC---UCGGC--UGGCCgCCGcg -5'
19155 3' -67.3 NC_004684.1 + 2933 0.72 0.099877
Target:  5'- gUGCCUCCGGuGCCGAgcaCCGaggccauCGGCGCg -3'
miRNA:   3'- gGCGGGGGCCuCGGCU---GGCc------GCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 3115 0.66 0.290101
Target:  5'- -gGCCCaCCuugcagggggaGGGGCCGuacGCCGGggucaCGGUGCa -3'
miRNA:   3'- ggCGGG-GG-----------CCUCGGC---UGGCC-----GCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 3519 0.78 0.03926
Target:  5'- aUCGCCgaCGGgugGGCCGACCuGGCGGUGCa -3'
miRNA:   3'- -GGCGGggGCC---UCGGCUGG-CCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 3640 0.67 0.247204
Target:  5'- gCGCCaCCUGGGucauGCCGGUCGGCaccgauGCGCa -3'
miRNA:   3'- gGCGG-GGGCCU----CGGCUGGCCGc-----CGCG- -5'
19155 3' -67.3 NC_004684.1 + 3652 0.67 0.247204
Target:  5'- -gGCCgCCCGGuGCCGGgucaucguaCGGUGGCccgGCa -3'
miRNA:   3'- ggCGG-GGGCCuCGGCUg--------GCCGCCG---CG- -5'
19155 3' -67.3 NC_004684.1 + 3927 0.73 0.087907
Target:  5'- gCGCCCCCGaauGCCGGaacUgGGCGGCGa -3'
miRNA:   3'- gGCGGGGGCcu-CGGCU---GgCCGCCGCg -5'
19155 3' -67.3 NC_004684.1 + 3953 0.67 0.219883
Target:  5'- uCCGCaccggacgaCCCCGGccaGGUCauccuGGCCGGUGGCaGCu -3'
miRNA:   3'- -GGCG---------GGGGCC---UCGG-----CUGGCCGCCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.