Results 1 - 20 of 292 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19155 | 3' | -67.3 | NC_004684.1 | + | 2694 | 0.74 | 0.077309 |
Target: 5'- aCCGCauCCCCGGccuGGCCGguGCCGGgGGCa- -3' miRNA: 3'- -GGCG--GGGGCC---UCGGC--UGGCCgCCGcg -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 11781 | 0.75 | 0.061085 |
Target: 5'- gUGgCCCCGuGGGCCGACCaGGCcaccguggagaagGGCGCg -3' miRNA: 3'- gGCgGGGGC-CUCGGCUGG-CCG-------------CCGCG- -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 34982 | 0.75 | 0.061884 |
Target: 5'- aCGCCCCUGGAgcagGCCGugCugauccgggugacgcGuGCGGCGCg -3' miRNA: 3'- gGCGGGGGCCU----CGGCugG---------------C-CGCCGCG- -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 37341 | 0.75 | 0.064509 |
Target: 5'- -aGCCCgCCGcaaCCGACCGGCGaGCGCg -3' miRNA: 3'- ggCGGG-GGCcucGGCUGGCCGC-CGCG- -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 66477 | 0.74 | 0.067766 |
Target: 5'- gCCGCCaCCCGGuGgCGGCUaggccuuGGCGGCGg -3' miRNA: 3'- -GGCGG-GGGCCuCgGCUGG-------CCGCCGCg -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 55169 | 0.74 | 0.069723 |
Target: 5'- gCCGgaagcaCCCCCGGAgaacgcaccGCUGG-CGGCGGCGCu -3' miRNA: 3'- -GGC------GGGGGCCU---------CGGCUgGCCGCCGCG- -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 57878 | 0.74 | 0.07155 |
Target: 5'- aCGCCagaCCGGuGCUGGCUGGUGGCcggGCu -3' miRNA: 3'- gGCGGg--GGCCuCGGCUGGCCGCCG---CG- -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 1054 | 0.74 | 0.073422 |
Target: 5'- gCGgCaCCGGuuguGCUGGCUGGCGGCGCu -3' miRNA: 3'- gGCgGgGGCCu---CGGCUGGCCGCCGCG- -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 41447 | 0.74 | 0.077309 |
Target: 5'- gUGCCgCCGGugucaguggGGCUGAccCCGGCGGUGCu -3' miRNA: 3'- gGCGGgGGCC---------UCGGCU--GGCCGCCGCG- -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 19485 | 0.75 | 0.059672 |
Target: 5'- gCGCCCCUGGAGCCaGCCGcugcuGUGGUGg -3' miRNA: 3'- gGCGGGGGCCUCGGcUGGC-----CGCCGCg -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 59445 | 0.75 | 0.056644 |
Target: 5'- uUGCCCaCCGGugugcGCCGGUCGGCGGCGa -3' miRNA: 3'- gGCGGG-GGCCu----CGGCUGGCCGCCGCg -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 47770 | 0.76 | 0.048429 |
Target: 5'- gCGCCCCCGGuagugcgucAGUCGGCCaggauguucucGGCGGCGa -3' miRNA: 3'- gGCGGGGGCC---------UCGGCUGG-----------CCGCCGCg -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 36771 | 0.81 | 0.019739 |
Target: 5'- gCCGCgCCCGGuGCCGACgcugguCGGCGGCGg -3' miRNA: 3'- -GGCGgGGGCCuCGGCUG------GCCGCCGCg -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 12945 | 0.8 | 0.023147 |
Target: 5'- gCCGucggcaCCCCCGGugcucccGCCGACCGGCGGCagGCa -3' miRNA: 3'- -GGC------GGGGGCCu------CGGCUGGCCGCCG--CG- -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 12351 | 0.79 | 0.028533 |
Target: 5'- aCCGCCCCCGGucuaacuGGCUuACCGGgGGCGg -3' miRNA: 3'- -GGCGGGGGCC-------UCGGcUGGCCgCCGCg -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 61315 | 0.79 | 0.030969 |
Target: 5'- aCCGCCgCCGGGccGCCGcccUCGGCGGCGUa -3' miRNA: 3'- -GGCGGgGGCCU--CGGCu--GGCCGCCGCG- -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 11433 | 0.78 | 0.033521 |
Target: 5'- uUCGCCaaCCCGGAGCUGACCGgGCcgacGCGCa -3' miRNA: 3'- -GGCGG--GGGCCUCGGCUGGC-CGc---CGCG- -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 3519 | 0.78 | 0.03926 |
Target: 5'- aUCGCCgaCGGgugGGCCGACCuGGCGGUGCa -3' miRNA: 3'- -GGCGGggGCC---UCGGCUGG-CCGCCGCG- -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 15514 | 0.77 | 0.041379 |
Target: 5'- -gGCCgCCCGGGGCCGggcGCUGGaGGCGCu -3' miRNA: 3'- ggCGG-GGGCCUCGGC---UGGCCgCCGCG- -5' |
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19155 | 3' | -67.3 | NC_004684.1 | + | 19330 | 0.76 | 0.047178 |
Target: 5'- gCCGCCgCCGuGGCCGAgCGGgaGGCGCu -3' miRNA: 3'- -GGCGGgGGCcUCGGCUgGCCg-CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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