miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19158 3' -55.2 NC_004684.1 + 66182 0.68 0.662693
Target:  5'- gGCCGACGAAGuCGACgCCgCGcUugCCGu -3'
miRNA:   3'- -UGGCUGCUUU-GUUG-GGgGC-AugGGCu -5'
19158 3' -55.2 NC_004684.1 + 65438 0.66 0.776489
Target:  5'- cGCUGGCGugcggcgcGCGGCCaCCGUGCgCCGGu -3'
miRNA:   3'- -UGGCUGCuu------UGUUGGgGGCAUG-GGCU- -5'
19158 3' -55.2 NC_004684.1 + 64265 0.7 0.587658
Target:  5'- cCCGGCGu-ACGGCCCCUcccccugcaagGUggGCCCGAa -3'
miRNA:   3'- uGGCUGCuuUGUUGGGGG-----------CA--UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 59233 0.66 0.813434
Target:  5'- cCCGGCGAucugguuGACGAUCUgCUGcACCCGAg -3'
miRNA:   3'- uGGCUGCU-------UUGUUGGG-GGCaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 58414 0.67 0.755661
Target:  5'- gGCCGcCGGAACcccGCcgguugccuccggCCCCGUGCCgGAc -3'
miRNA:   3'- -UGGCuGCUUUGu--UG-------------GGGGCAUGGgCU- -5'
19158 3' -55.2 NC_004684.1 + 57830 0.7 0.55586
Target:  5'- cCCGGCGguGCuGGCCgCCgGUACCCGc -3'
miRNA:   3'- uGGCUGCuuUG-UUGG-GGgCAUGGGCu -5'
19158 3' -55.2 NC_004684.1 + 56617 0.7 0.55586
Target:  5'- cACCGGCGAaccccGACAGCaaCCCGUcgACgCCGAa -3'
miRNA:   3'- -UGGCUGCU-----UUGUUGg-GGGCA--UG-GGCU- -5'
19158 3' -55.2 NC_004684.1 + 56368 0.68 0.705175
Target:  5'- cGCCGAUGAcguAACuGCCgCCGUGUCCGu -3'
miRNA:   3'- -UGGCUGCU---UUGuUGGgGGCAUGGGCu -5'
19158 3' -55.2 NC_004684.1 + 55418 0.67 0.766643
Target:  5'- gGCgGugGAGACcACCCagcagCGUGCgCCGGu -3'
miRNA:   3'- -UGgCugCUUUGuUGGGg----GCAUG-GGCU- -5'
19158 3' -55.2 NC_004684.1 + 54898 0.73 0.381146
Target:  5'- uGCgGcACGAGGCGGCCCUgGUGgCCGAg -3'
miRNA:   3'- -UGgC-UGCUUUGUUGGGGgCAUgGGCU- -5'
19158 3' -55.2 NC_004684.1 + 51139 0.66 0.805132
Target:  5'- uGCCGACGAAucugcgccgcCGACUCCUcgguGUGgCCGAu -3'
miRNA:   3'- -UGGCUGCUUu---------GUUGGGGG----CAUgGGCU- -5'
19158 3' -55.2 NC_004684.1 + 49383 0.68 0.67338
Target:  5'- uGCCGAUGuu---GCCgCCGUACUCGGu -3'
miRNA:   3'- -UGGCUGCuuuguUGGgGGCAUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 48588 0.73 0.411373
Target:  5'- aGCCuGACGAguaacccccacaaacGAaCAACCCCCGUACCgGc -3'
miRNA:   3'- -UGG-CUGCU---------------UU-GUUGGGGGCAUGGgCu -5'
19158 3' -55.2 NC_004684.1 + 48257 0.7 0.587658
Target:  5'- uGCaCGGCGGGACAGaCCCgCccACCCGAa -3'
miRNA:   3'- -UG-GCUGCUUUGUU-GGGgGcaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 47140 0.74 0.33947
Target:  5'- -gUGGCGuAGGCGGCCCCgGUGCCCa- -3'
miRNA:   3'- ugGCUGC-UUUGUUGGGGgCAUGGGcu -5'
19158 3' -55.2 NC_004684.1 + 44507 0.7 0.577013
Target:  5'- cACCGACGcgcAGCAGCUCCCGaaUGgUCGAg -3'
miRNA:   3'- -UGGCUGCu--UUGUUGGGGGC--AUgGGCU- -5'
19158 3' -55.2 NC_004684.1 + 43391 0.66 0.803268
Target:  5'- cCCGACGGcccggagAACGggucgccGCCgCCGaACCCGAg -3'
miRNA:   3'- uGGCUGCU-------UUGU-------UGGgGGCaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 42089 0.69 0.598339
Target:  5'- gGCCGACGAAccGCcGCCgCCUGgugugGCCgGAa -3'
miRNA:   3'- -UGGCUGCUU--UGuUGG-GGGCa----UGGgCU- -5'
19158 3' -55.2 NC_004684.1 + 42033 0.69 0.619773
Target:  5'- gACCGACGAAugGGaggCCCUGaUGgCCGAc -3'
miRNA:   3'- -UGGCUGCUUugUUg--GGGGC-AUgGGCU- -5'
19158 3' -55.2 NC_004684.1 + 42003 0.66 0.814348
Target:  5'- cGCUGGCGA--CAACCuCCUGgauCCCGu -3'
miRNA:   3'- -UGGCUGCUuuGUUGG-GGGCau-GGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.