Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19180 | 3' | -57.5 | NC_004684.1 | + | 33153 | 0.66 | 0.582965 |
Target: 5'- aGCauggGCGucaGUACGCAGGCCcUCGACc- -3' miRNA: 3'- -CGga--CGUg--CGUGCGUCCGG-AGUUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 37273 | 0.66 | 0.59811 |
Target: 5'- uGCCUGUagcucGCGCAggcguugcuccacacUGCGGGCCcauUCGGCg- -3' miRNA: 3'- -CGGACG-----UGCGU---------------GCGUCCGG---AGUUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 47623 | 0.66 | 0.572195 |
Target: 5'- cGCCcccgGCGgGCACcgGCAGGCCgcgCAGgUAc -3' miRNA: 3'- -CGGa---CGUgCGUG--CGUCCGGa--GUUgAU- -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 61679 | 0.66 | 0.572195 |
Target: 5'- cGCCUGCACGCcauugGCGuCGGuGCCgUgGGCa- -3' miRNA: 3'- -CGGACGUGCG-----UGC-GUC-CGG-AgUUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 41869 | 0.66 | 0.615484 |
Target: 5'- gGUCUgGUACuGgACGCAGGCCcgCGACa- -3' miRNA: 3'- -CGGA-CGUG-CgUGCGUCCGGa-GUUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 26694 | 0.66 | 0.604619 |
Target: 5'- aCCUGCugGUGCGCgugcugcucaAGGUgCUCGGCg- -3' miRNA: 3'- cGGACGugCGUGCG----------UCCG-GAGUUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 25504 | 0.66 | 0.572195 |
Target: 5'- gGCCaGCGCGUucauguCGCGGGCCU--GCg- -3' miRNA: 3'- -CGGaCGUGCGu-----GCGUCCGGAguUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 48566 | 0.66 | 0.630718 |
Target: 5'- gGCCUGCGCGCcgaGCuugacgauggaguuGGCCagCAGCa- -3' miRNA: 3'- -CGGACGUGCGug-CGu-------------CCGGa-GUUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 4898 | 0.66 | 0.572195 |
Target: 5'- gGCCUGguCGC-CaCcGGCCUCGGCg- -3' miRNA: 3'- -CGGACguGCGuGcGuCCGGAGUUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 58047 | 0.66 | 0.626364 |
Target: 5'- cGCCgGgACGCAcCGgAGGCCUCcuCg- -3' miRNA: 3'- -CGGaCgUGCGU-GCgUCCGGAGuuGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 45152 | 0.66 | 0.593776 |
Target: 5'- cGCCUGCGCGUugaucGCGCGGguGCCgUCGcGCa- -3' miRNA: 3'- -CGGACGUGCG-----UGCGUC--CGG-AGU-UGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 15000 | 0.66 | 0.604619 |
Target: 5'- cGCCUGCGCGa--GCAGGUCauggUCGAg-- -3' miRNA: 3'- -CGGACGUGCgugCGUCCGG----AGUUgau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 60051 | 0.66 | 0.593776 |
Target: 5'- gGCCUcGCACucgugGCGCGC-GGCC-CGGCg- -3' miRNA: 3'- -CGGA-CGUG-----CGUGCGuCCGGaGUUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 33098 | 0.66 | 0.582965 |
Target: 5'- gGCgCUGC-CG-ACGCAGGCgCUCGcGCUGg -3' miRNA: 3'- -CG-GACGuGCgUGCGUCCG-GAGU-UGAU- -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 61181 | 0.66 | 0.582965 |
Target: 5'- gGUCgGCGgGguUGguGGCCUCGGCg- -3' miRNA: 3'- -CGGaCGUgCguGCguCCGGAGUUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 3679 | 0.66 | 0.604619 |
Target: 5'- cCCUGUugGCACGCuGGCaggagaucgcCAGCg- -3' miRNA: 3'- cGGACGugCGUGCGuCCGga--------GUUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 27083 | 0.66 | 0.593776 |
Target: 5'- uGCCUGC-CGgGCGCuacGCCaUCGACa- -3' miRNA: 3'- -CGGACGuGCgUGCGuc-CGG-AGUUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 41987 | 0.66 | 0.604619 |
Target: 5'- --aUGCcCGCGCGguGGCCgcuggCGACa- -3' miRNA: 3'- cggACGuGCGUGCguCCGGa----GUUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 54627 | 0.66 | 0.582965 |
Target: 5'- gGCCgcagGCGCaGcCGCGCGGGCCaagagggcgUCGACc- -3' miRNA: 3'- -CGGa---CGUG-C-GUGCGUCCGG---------AGUUGau -5' |
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19180 | 3' | -57.5 | NC_004684.1 | + | 4459 | 0.66 | 0.572195 |
Target: 5'- cGCC-GCGCGCugGUcGGCUUCGu--- -3' miRNA: 3'- -CGGaCGUGCGugCGuCCGGAGUugau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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