miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19180 3' -57.5 NC_004684.1 + 21278 0.68 0.468265
Target:  5'- cCCgGCACGCGCGCccGGCCguaucugcgCAACg- -3'
miRNA:   3'- cGGaCGUGCGUGCGu-CCGGa--------GUUGau -5'
19180 3' -57.5 NC_004684.1 + 13121 0.7 0.392545
Target:  5'- gGCCaGCGCGgcagcuucucCACGCAGcGCCUCGcgucGCUGa -3'
miRNA:   3'- -CGGaCGUGC----------GUGCGUC-CGGAGU----UGAU- -5'
19180 3' -57.5 NC_004684.1 + 15949 0.7 0.392545
Target:  5'- gGCCUaCAUcgGCAUGCAGGCCUUggUg- -3'
miRNA:   3'- -CGGAcGUG--CGUGCGUCCGGAGuuGau -5'
19180 3' -57.5 NC_004684.1 + 22523 0.69 0.420013
Target:  5'- -gCUG-ACGCAgGCAGGCCUC-GCUc -3'
miRNA:   3'- cgGACgUGCGUgCGUCCGGAGuUGAu -5'
19180 3' -57.5 NC_004684.1 + 12565 0.69 0.420013
Target:  5'- cGCUcGCACGUcagGCGCAGGCggcuaUCAACg- -3'
miRNA:   3'- -CGGaCGUGCG---UGCGUCCGg----AGUUGau -5'
19180 3' -57.5 NC_004684.1 + 62257 0.69 0.420013
Target:  5'- uCCUGCcCGCucauGCGguGGCCUuCAGCa- -3'
miRNA:   3'- cGGACGuGCG----UGCguCCGGA-GUUGau -5'
19180 3' -57.5 NC_004684.1 + 4439 0.69 0.438958
Target:  5'- gGCCUGCugGCGCaGCuggAGGCCgCAcguGCg- -3'
miRNA:   3'- -CGGACGugCGUG-CG---UCCGGaGU---UGau -5'
19180 3' -57.5 NC_004684.1 + 6374 0.69 0.438958
Target:  5'- gGCCUGCGCGuUGCGCAGcGUgUUGGCg- -3'
miRNA:   3'- -CGGACGUGC-GUGCGUC-CGgAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 60594 0.69 0.448612
Target:  5'- cGCCgcGCACgGUGCGCAGGCCggucaccCGGCg- -3'
miRNA:   3'- -CGGa-CGUG-CGUGCGUCCGGa------GUUGau -5'
19180 3' -57.5 NC_004684.1 + 67069 0.7 0.392545
Target:  5'- cGCCguacccgGUGCGgGCGUuGGCCUCGGCg- -3'
miRNA:   3'- -CGGa------CGUGCgUGCGuCCGGAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 8175 0.7 0.383652
Target:  5'- cGCCggggGCGCGCugGgcCAGGCg-CAGCUGa -3'
miRNA:   3'- -CGGa---CGUGCGugC--GUCCGgaGUUGAU- -5'
19180 3' -57.5 NC_004684.1 + 10308 0.7 0.366272
Target:  5'- cGCCcgcaccgaugUGCGCGCcgcaACGCAGGCCgccaUCGACc- -3'
miRNA:   3'- -CGG----------ACGUGCG----UGCGUCCGG----AGUUGau -5'
19180 3' -57.5 NC_004684.1 + 4234 0.79 0.095942
Target:  5'- cGCCUGCGCgGCGCGCAGGagccgcaCUCGGCc- -3'
miRNA:   3'- -CGGACGUG-CGUGCGUCCg------GAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 43731 0.76 0.157855
Target:  5'- uGCCUGgACauaGCGCAGcGCCUCGGCUGa -3'
miRNA:   3'- -CGGACgUGcg-UGCGUC-CGGAGUUGAU- -5'
19180 3' -57.5 NC_004684.1 + 8581 0.73 0.228932
Target:  5'- aGCCUGCcgagcaugaACGCGcCGguGGCCUCGAa-- -3'
miRNA:   3'- -CGGACG---------UGCGU-GCguCCGGAGUUgau -5'
19180 3' -57.5 NC_004684.1 + 62293 0.73 0.234928
Target:  5'- gGCgCUGCuccaGCGcCGCGCGGGCCUCcGCg- -3'
miRNA:   3'- -CG-GACG----UGC-GUGCGUCCGGAGuUGau -5'
19180 3' -57.5 NC_004684.1 + 40113 0.72 0.287735
Target:  5'- gGCCguaGCggGCGCugGC-GGCCUCGGCa- -3'
miRNA:   3'- -CGGa--CG--UGCGugCGuCCGGAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 10248 0.71 0.309819
Target:  5'- gGCCgUGCGCGUggaGCGGGCCaacCAACUGg -3'
miRNA:   3'- -CGG-ACGUGCGug-CGUCCGGa--GUUGAU- -5'
19180 3' -57.5 NC_004684.1 + 52111 0.7 0.356947
Target:  5'- gGCCcagcaggUGCAC-CGCGCAGGCCUCcAgUGu -3'
miRNA:   3'- -CGG-------ACGUGcGUGCGUCCGGAGuUgAU- -5'
19180 3' -57.5 NC_004684.1 + 2547 0.7 0.357788
Target:  5'- aCCUGCguggaGCGCGCGgAGGCCUUcGCc- -3'
miRNA:   3'- cGGACG-----UGCGUGCgUCCGGAGuUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.