miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19180 3' -57.5 NC_004684.1 + 28135 1.08 0.000742
Target:  5'- gGCCUGCACGCACGCAGGCCUCAACUAc -3'
miRNA:   3'- -CGGACGUGCGUGCGUCCGGAGUUGAU- -5'
19180 3' -57.5 NC_004684.1 + 62934 0.81 0.068274
Target:  5'- gGCCUcGCGCGCACGUGcGGCCUcCAGCUGc -3'
miRNA:   3'- -CGGA-CGUGCGUGCGU-CCGGA-GUUGAU- -5'
19180 3' -57.5 NC_004684.1 + 4234 0.79 0.095942
Target:  5'- cGCCUGCGCgGCGCGCAGGagccgcaCUCGGCc- -3'
miRNA:   3'- -CGGACGUG-CGUGCGUCCg------GAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 43731 0.76 0.157855
Target:  5'- uGCCUGgACauaGCGCAGcGCCUCGGCUGa -3'
miRNA:   3'- -CGGACgUGcg-UGCGUC-CGGAGUUGAU- -5'
19180 3' -57.5 NC_004684.1 + 39260 0.75 0.185499
Target:  5'- gGCCUGCGUGCGUGCAGGCCacCAGCa- -3'
miRNA:   3'- -CGGACGUGCGUGCGUCCGGa-GUUGau -5'
19180 3' -57.5 NC_004684.1 + 65260 0.74 0.195624
Target:  5'- cGCCga-ACGCACGCAGGUC-CAGCUc -3'
miRNA:   3'- -CGGacgUGCGUGCGUCCGGaGUUGAu -5'
19180 3' -57.5 NC_004684.1 + 22910 0.74 0.211161
Target:  5'- aCCUGUcccggugguccacGCGCACGCAGGUggccagcgugCUCAGCUGg -3'
miRNA:   3'- cGGACG-------------UGCGUGCGUCCG----------GAGUUGAU- -5'
19180 3' -57.5 NC_004684.1 + 20639 0.74 0.223065
Target:  5'- cGCCUGCGucCGCACGCuGgacaauaccgccGCCUCAACg- -3'
miRNA:   3'- -CGGACGU--GCGUGCGuC------------CGGAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 8581 0.73 0.228932
Target:  5'- aGCCUGCcgagcaugaACGCGcCGguGGCCUCGAa-- -3'
miRNA:   3'- -CGGACG---------UGCGU-GCguCCGGAGUUgau -5'
19180 3' -57.5 NC_004684.1 + 62293 0.73 0.234928
Target:  5'- gGCgCUGCuccaGCGcCGCGCGGGCCUCcGCg- -3'
miRNA:   3'- -CG-GACG----UGC-GUGCGUCCGGAGuUGau -5'
19180 3' -57.5 NC_004684.1 + 40113 0.72 0.287735
Target:  5'- gGCCguaGCggGCGCugGC-GGCCUCGGCa- -3'
miRNA:   3'- -CGGa--CG--UGCGugCGuCCGGAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 23414 0.72 0.287735
Target:  5'- gGCCggGUACGCccGCGCAcggcugaugcucGGCCUCGACg- -3'
miRNA:   3'- -CGGa-CGUGCG--UGCGU------------CCGGAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 10248 0.71 0.309819
Target:  5'- gGCCgUGCGCGUggaGCGGGCCaacCAACUGg -3'
miRNA:   3'- -CGG-ACGUGCGug-CGUCCGGa--GUUGAU- -5'
19180 3' -57.5 NC_004684.1 + 32834 0.71 0.317462
Target:  5'- cGCCaGCGCGCucuCGUAgcuggccauGGCCUCGACa- -3'
miRNA:   3'- -CGGaCGUGCGu--GCGU---------CCGGAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 1721 0.71 0.325246
Target:  5'- cGCCUGCugGC--GCAGGCCU--ACUc -3'
miRNA:   3'- -CGGACGugCGugCGUCCGGAguUGAu -5'
19180 3' -57.5 NC_004684.1 + 1926 0.71 0.330779
Target:  5'- gGCCUGCcgggccugguaccgGCGCACGguGGCCgcgCGccGCa- -3'
miRNA:   3'- -CGGACG--------------UGCGUGCguCCGGa--GU--UGau -5'
19180 3' -57.5 NC_004684.1 + 61538 0.71 0.341237
Target:  5'- gGCCUGCcaguCGCACGCcuGGuCCUCGAa-- -3'
miRNA:   3'- -CGGACGu---GCGUGCGu-CC-GGAGUUgau -5'
19180 3' -57.5 NC_004684.1 + 52111 0.7 0.356947
Target:  5'- gGCCcagcaggUGCAC-CGCGCAGGCCUCcAgUGu -3'
miRNA:   3'- -CGG-------ACGUGcGUGCGUCCGGAGuUgAU- -5'
19180 3' -57.5 NC_004684.1 + 52252 0.7 0.356947
Target:  5'- -gCUGCGCGCugGCguggaucAGGCC-CAGCg- -3'
miRNA:   3'- cgGACGUGCGugCG-------UCCGGaGUUGau -5'
19180 3' -57.5 NC_004684.1 + 2547 0.7 0.357788
Target:  5'- aCCUGCguggaGCGCGCGgAGGCCUUcGCc- -3'
miRNA:   3'- cGGACG-----UGCGUGCgUCCGGAGuUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.