miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19180 3' -57.5 NC_004684.1 + 1510 0.68 0.508832
Target:  5'- aCCUGCGCGcCGCGCucaacGGCgaCGACg- -3'
miRNA:   3'- cGGACGUGC-GUGCGu----CCGgaGUUGau -5'
19180 3' -57.5 NC_004684.1 + 1704 0.67 0.550805
Target:  5'- aCCUGCAC-CugGCAGGCaC-CGGCc- -3'
miRNA:   3'- cGGACGUGcGugCGUCCG-GaGUUGau -5'
19180 3' -57.5 NC_004684.1 + 1721 0.71 0.325246
Target:  5'- cGCCUGCugGC--GCAGGCCU--ACUc -3'
miRNA:   3'- -CGGACGugCGugCGUCCGGAguUGAu -5'
19180 3' -57.5 NC_004684.1 + 1926 0.71 0.330779
Target:  5'- gGCCUGCcgggccugguaccgGCGCACGguGGCCgcgCGccGCa- -3'
miRNA:   3'- -CGGACG--------------UGCGUGCguCCGGa--GU--UGau -5'
19180 3' -57.5 NC_004684.1 + 2547 0.7 0.357788
Target:  5'- aCCUGCguggaGCGCGCGgAGGCCUUcGCc- -3'
miRNA:   3'- cGGACG-----UGCGUGCgUCCGGAGuUGau -5'
19180 3' -57.5 NC_004684.1 + 3679 0.66 0.604619
Target:  5'- cCCUGUugGCACGCuGGCaggagaucgcCAGCg- -3'
miRNA:   3'- cGGACGugCGUGCGuCCGga--------GUUGau -5'
19180 3' -57.5 NC_004684.1 + 3813 0.69 0.452506
Target:  5'- cGCC-GCGC-CGCGCAGGCCgauggaccugauggCAGCg- -3'
miRNA:   3'- -CGGaCGUGcGUGCGUCCGGa-------------GUUGau -5'
19180 3' -57.5 NC_004684.1 + 3896 0.68 0.498544
Target:  5'- cCCUGCugGC--GCAGGCg-CAGCUGg -3'
miRNA:   3'- cGGACGugCGugCGUCCGgaGUUGAU- -5'
19180 3' -57.5 NC_004684.1 + 4016 0.66 0.615484
Target:  5'- cGCCaucgGCugGCGCGUcGGCCgcUCGgugcGCUGg -3'
miRNA:   3'- -CGGa---CGugCGUGCGuCCGG--AGU----UGAU- -5'
19180 3' -57.5 NC_004684.1 + 4234 0.79 0.095942
Target:  5'- cGCCUGCGCgGCGCGCAGGagccgcaCUCGGCc- -3'
miRNA:   3'- -CGGACGUG-CGUGCGUCCg------GAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 4439 0.69 0.438958
Target:  5'- gGCCUGCugGCGCaGCuggAGGCCgCAcguGCg- -3'
miRNA:   3'- -CGGACGugCGUG-CG---UCCGGaGU---UGau -5'
19180 3' -57.5 NC_004684.1 + 4459 0.66 0.572195
Target:  5'- cGCC-GCGCGCugGUcGGCUUCGu--- -3'
miRNA:   3'- -CGGaCGUGCGugCGuCCGGAGUugau -5'
19180 3' -57.5 NC_004684.1 + 4898 0.66 0.572195
Target:  5'- gGCCUGguCGC-CaCcGGCCUCGGCg- -3'
miRNA:   3'- -CGGACguGCGuGcGuCCGGAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 5859 0.67 0.529666
Target:  5'- gGCgUGCGa-CugGCAGGCCgggCAGCa- -3'
miRNA:   3'- -CGgACGUgcGugCGUCCGGa--GUUGau -5'
19180 3' -57.5 NC_004684.1 + 6374 0.69 0.438958
Target:  5'- gGCCUGCGCGuUGCGCAGcGUgUUGGCg- -3'
miRNA:   3'- -CGGACGUGC-GUGCGUC-CGgAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 7858 0.67 0.519207
Target:  5'- cGCUggcggUGCAggaccUGUGCGCAGGCCUaCGACg- -3'
miRNA:   3'- -CGG-----ACGU-----GCGUGCGUCCGGA-GUUGau -5'
19180 3' -57.5 NC_004684.1 + 8175 0.7 0.383652
Target:  5'- cGCCggggGCGCGCugGgcCAGGCg-CAGCUGa -3'
miRNA:   3'- -CGGa---CGUGCGugC--GUCCGgaGUUGAU- -5'
19180 3' -57.5 NC_004684.1 + 8581 0.73 0.228932
Target:  5'- aGCCUGCcgagcaugaACGCGcCGguGGCCUCGAa-- -3'
miRNA:   3'- -CGGACG---------UGCGU-GCguCCGGAGUUgau -5'
19180 3' -57.5 NC_004684.1 + 8917 0.69 0.409806
Target:  5'- gGCggGCGCGgcaaguuCGCGCuGGCCUCAGCg- -3'
miRNA:   3'- -CGgaCGUGC-------GUGCGuCCGGAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 10248 0.71 0.309819
Target:  5'- gGCCgUGCGCGUggaGCGGGCCaacCAACUGg -3'
miRNA:   3'- -CGG-ACGUGCGug-CGUCCGGa--GUUGAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.