miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 67368 0.66 0.348385
Target:  5'- -cCCUGGUACC-GCC-CCCGGuguccggcuCCACg -3'
miRNA:   3'- ucGGACCAUGGcCGGaGGGCC---------GGUGa -5'
19183 5' -63.8 NC_004684.1 + 66904 0.66 0.348385
Target:  5'- cGGCCUucgGCgCGGCCUUggCGGCCACa -3'
miRNA:   3'- -UCGGAccaUG-GCCGGAGg-GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 66833 0.68 0.245012
Target:  5'- cGGCCUuguccuccucGGUGgCGGCCUcgaccgCCUGGCCAg- -3'
miRNA:   3'- -UCGGA----------CCAUgGCCGGA------GGGCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 66621 0.73 0.10811
Target:  5'- cAGCUUGGUGCCugcGGCCUUggUGGCCACg -3'
miRNA:   3'- -UCGGACCAUGG---CCGGAGg-GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 66497 0.71 0.151963
Target:  5'- aGGCCuUGGcGgCGGCCUCgCgGGCCGCc -3'
miRNA:   3'- -UCGG-ACCaUgGCCGGAG-GgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 65965 0.73 0.105279
Target:  5'- cGGCCUGG-ACCuuggcccggcaGGCCUCCaGGUCGCUg -3'
miRNA:   3'- -UCGGACCaUGG-----------CCGGAGGgCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 63541 0.81 0.027702
Target:  5'- gGGCgUGGcGCuCGGCCUCCuCGGCCGCUg -3'
miRNA:   3'- -UCGgACCaUG-GCCGGAGG-GCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 62533 0.66 0.332203
Target:  5'- cAGCCUGGUcGCUGGCCagcagcucgUCCagcuuggccuuguCGGCCGg- -3'
miRNA:   3'- -UCGGACCA-UGGCCGG---------AGG-------------GCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 61702 0.74 0.0972
Target:  5'- uGCCgUGGgcagGCCGGgC-CCCGGCCACc -3'
miRNA:   3'- uCGG-ACCa---UGGCCgGaGGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 61522 0.68 0.263437
Target:  5'- cAGgCUGGUGcugcCCGGCCUgCCaGUCGCa -3'
miRNA:   3'- -UCgGACCAU----GGCCGGAgGGcCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 60594 0.66 0.318044
Target:  5'- cGCCgcgcacGGUGCgcaGGCCggucaCCCGGCgCACg -3'
miRNA:   3'- uCGGa-----CCAUGg--CCGGa----GGGCCG-GUGa -5'
19183 5' -63.8 NC_004684.1 + 60292 0.66 0.332961
Target:  5'- uGGCCcGGUccucGgCGGCCUCCagGGCCuCg -3'
miRNA:   3'- -UCGGaCCA----UgGCCGGAGGg-CCGGuGa -5'
19183 5' -63.8 NC_004684.1 + 60131 0.66 0.356286
Target:  5'- cGCCUGG---CGGCCUgCUCGGUgGCg -3'
miRNA:   3'- uCGGACCaugGCCGGA-GGGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 60079 0.68 0.263437
Target:  5'- cGGCCc-GUGCgGGCCUucaCCgGGCCACc -3'
miRNA:   3'- -UCGGacCAUGgCCGGA---GGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 59472 0.69 0.222124
Target:  5'- uGCCUGGguucuccACCGGCUggCUggCGGCCACc -3'
miRNA:   3'- uCGGACCa------UGGCCGGa-GG--GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 58395 0.66 0.332961
Target:  5'- cGCgUGGa---GGCCUuggCCCGGCCGCc -3'
miRNA:   3'- uCGgACCauggCCGGA---GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 58166 0.66 0.348385
Target:  5'- cAGCagguucgGGUcCUGGCCcaCCCGGUCACg -3'
miRNA:   3'- -UCGga-----CCAuGGCCGGa-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 57821 0.72 0.123363
Target:  5'- cGGCCUGGUcCCGGCggUgCUGGCCGCc -3'
miRNA:   3'- -UCGGACCAuGGCCGg-AgGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 56464 0.7 0.177235
Target:  5'- aGGCCUGGaGCacgaGGCCaaacugCUCGGCCugUa -3'
miRNA:   3'- -UCGGACCaUGg---CCGGa-----GGGCCGGugA- -5'
19183 5' -63.8 NC_004684.1 + 54668 0.69 0.206174
Target:  5'- cGGCCUGGUcCaCGGCCUCUggcgUGGCUuCUg -3'
miRNA:   3'- -UCGGACCAuG-GCCGGAGG----GCCGGuGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.