miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 11814 0.77 0.055117
Target:  5'- cGCCuUGGUGCCuGGaCC-CCCGGCCACc -3'
miRNA:   3'- uCGG-ACCAUGG-CC-GGaGGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 4464 0.68 0.251032
Target:  5'- cGCgCUGGUcggcuucgucACCGGCCagggCCUGGCC-Cg -3'
miRNA:   3'- uCG-GACCA----------UGGCCGGa---GGGCCGGuGa -5'
19183 5' -63.8 NC_004684.1 + 21791 0.68 0.251032
Target:  5'- cGCgCUGGUGCUGGaCCUgUCCGGCUcCa -3'
miRNA:   3'- uCG-GACCAUGGCC-GGA-GGGCCGGuGa -5'
19183 5' -63.8 NC_004684.1 + 18408 0.66 0.356286
Target:  5'- cGGCCagcagGGcACCGacgcGCCcgcCCCGGCCACc -3'
miRNA:   3'- -UCGGa----CCaUGGC----CGGa--GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 42626 0.75 0.085024
Target:  5'- cGGCCcGGUGCCGGuCUUCCCuGCCAg- -3'
miRNA:   3'- -UCGGaCCAUGGCC-GGAGGGcCGGUga -5'
19183 5' -63.8 NC_004684.1 + 48519 0.73 0.117035
Target:  5'- cGCgCUGGUGCCcugagugcGGCCaCCCGGUCACc -3'
miRNA:   3'- uCG-GACCAUGG--------CCGGaGGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 41368 0.71 0.160001
Target:  5'- uGCUUGGUGaaguCCGGCaCguugaaCCCGGCCGCc -3'
miRNA:   3'- uCGGACCAU----GGCCG-Ga-----GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 10649 0.71 0.164163
Target:  5'- uGGUCUGGUGCCGG-UUCCCGuGCUggcGCg -3'
miRNA:   3'- -UCGGACCAUGGCCgGAGGGC-CGG---UGa -5'
19183 5' -63.8 NC_004684.1 + 54668 0.69 0.206174
Target:  5'- cGGCCUGGUcCaCGGCCUCUggcgUGGCUuCUg -3'
miRNA:   3'- -UCGGACCAuG-GCCGGAGG----GCCGGuGA- -5'
19183 5' -63.8 NC_004684.1 + 473 0.68 0.239113
Target:  5'- cGCCgaGGUugUGGCCgCCaaGGCCGCg -3'
miRNA:   3'- uCGGa-CCAugGCCGGaGGg-CCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 59472 0.69 0.222124
Target:  5'- uGCCUGGguucuccACCGGCUggCUggCGGCCACc -3'
miRNA:   3'- uCGGACCa------UGGCCGGa-GG--GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 20976 0.7 0.195607
Target:  5'- cGCCgGGacaUGCUGGCCguggacccgaccaUCCCGGCCAg- -3'
miRNA:   3'- uCGGaCC---AUGGCCGG-------------AGGGCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 16460 0.76 0.061465
Target:  5'- cGCCUGGacgagGCCGGgCUgUCCGGCCACg -3'
miRNA:   3'- uCGGACCa----UGGCCgGA-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 25448 0.69 0.222124
Target:  5'- aGGCCguUGGUGCCGccguugaccGCCUUggucaCGGCCACg -3'
miRNA:   3'- -UCGG--ACCAUGGC---------CGGAGg----GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 1934 0.76 0.064898
Target:  5'- gGGCCUGGUACCGGCg-CacggUGGCCGCg -3'
miRNA:   3'- -UCGGACCAUGGCCGgaGg---GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 41328 0.71 0.164163
Target:  5'- cGCCgaGGUGuuGGCCUcgaacucgccgcCCUGGCCGCc -3'
miRNA:   3'- uCGGa-CCAUggCCGGA------------GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 721 0.68 0.239113
Target:  5'- aAGaCCUGGgcaccGCCGGUgaCCgGGCCGCc -3'
miRNA:   3'- -UC-GGACCa----UGGCCGgaGGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 20336 0.68 0.251032
Target:  5'- gGGCCgGGcaUGUCGGCCUCCggguggggCGGCUACUg -3'
miRNA:   3'- -UCGGaCC--AUGGCCGGAGG--------GCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 17352 0.75 0.076344
Target:  5'- uGGCCUGGaGCCaGGCa--CCGGCCACg -3'
miRNA:   3'- -UCGGACCaUGG-CCGgagGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 39287 0.72 0.127979
Target:  5'- aGGCCUcgaaccgcaccacccGGUGCgGGUCgcgcggcggCCCGGCCACa -3'
miRNA:   3'- -UCGGA---------------CCAUGgCCGGa--------GGGCCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.