Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19200 | 3' | -58.1 | NC_004684.1 | + | 39671 | 0.66 | 0.584919 |
Target: 5'- cGCGuGCCucguGCUCGcGCUCgGCCGcCGAg -3' miRNA: 3'- uUGU-CGGu---CGAGC-CGAGaCGGUaGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 38550 | 0.66 | 0.584919 |
Target: 5'- uGACGGCCAGC-CaGUUC-GCCGcaaUCGAg -3' miRNA: 3'- -UUGUCGGUCGaGcCGAGaCGGU---AGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 25071 | 0.66 | 0.563424 |
Target: 5'- gGGCGGCCGGgUUGGUg--GCC-UCGAu -3' miRNA: 3'- -UUGUCGGUCgAGCCGagaCGGuAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 9448 | 0.66 | 0.563424 |
Target: 5'- cGCAGCgAGCaccgcaggcggUCGGCaaUGUCAUCGGc -3' miRNA: 3'- uUGUCGgUCG-----------AGCCGagACGGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 31747 | 0.66 | 0.552753 |
Target: 5'- cGACGGCCcuGUacgUCGGC-CUguacGCCAUCGAc -3' miRNA: 3'- -UUGUCGGu-CG---AGCCGaGA----CGGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 25841 | 0.66 | 0.542144 |
Target: 5'- cGGCGGCCAgauGCUCGGCg--GCCuguUCa- -3' miRNA: 3'- -UUGUCGGU---CGAGCCGagaCGGu--AGcu -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 32220 | 0.67 | 0.510754 |
Target: 5'- cACAcCCGGUUcCGGCUCgGCCAcCGAg -3' miRNA: 3'- uUGUcGGUCGA-GCCGAGaCGGUaGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 55464 | 0.67 | 0.490253 |
Target: 5'- cAUGGCCAGCggaCGGCcCUgGCUGUCGGu -3' miRNA: 3'- uUGUCGGUCGa--GCCGaGA-CGGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 43930 | 0.67 | 0.480146 |
Target: 5'- uGAUGGCgGGCaUUGGCUCccaggucucGCCGUCGAg -3' miRNA: 3'- -UUGUCGgUCG-AGCCGAGa--------CGGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 47647 | 0.67 | 0.470143 |
Target: 5'- gGACGGCCAGUgCGGCguugGCCGccUUGAu -3' miRNA: 3'- -UUGUCGGUCGaGCCGaga-CGGU--AGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 13557 | 0.67 | 0.470143 |
Target: 5'- uGGCGGCCA--UCGGCUaCUG-CGUCGAg -3' miRNA: 3'- -UUGUCGGUcgAGCCGA-GACgGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 65709 | 0.67 | 0.467162 |
Target: 5'- uGCGcGCCAGCUCGGC-CUggugggcgaaaaacGCCA-CGAa -3' miRNA: 3'- uUGU-CGGUCGAGCCGaGA--------------CGGUaGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 9294 | 0.68 | 0.450461 |
Target: 5'- -cCGGCCAuGCUCGGCgcgCUcCCgGUCGAg -3' miRNA: 3'- uuGUCGGU-CGAGCCGa--GAcGG-UAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 6082 | 0.68 | 0.450461 |
Target: 5'- cGGCGGcCCGGCggCGGUgCUGCCGgaaaUCGAc -3' miRNA: 3'- -UUGUC-GGUCGa-GCCGaGACGGU----AGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 45305 | 0.68 | 0.440792 |
Target: 5'- -cCAGCCAGC-CGucgCUGCCGUUGAu -3' miRNA: 3'- uuGUCGGUCGaGCcgaGACGGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 8055 | 0.68 | 0.421813 |
Target: 5'- cAGC-GCCAGCagggugCGGCUCauugccagcGCCAUCGAc -3' miRNA: 3'- -UUGuCGGUCGa-----GCCGAGa--------CGGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 45864 | 0.68 | 0.421813 |
Target: 5'- cACcGCCAGCUCGGUggUGgUGUCGAu -3' miRNA: 3'- uUGuCGGUCGAGCCGagACgGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 62894 | 0.68 | 0.418077 |
Target: 5'- uGGCcGCCAGCUCGGCgggguuacgguagCgGCCAaCGAc -3' miRNA: 3'- -UUGuCGGUCGAGCCGa------------GaCGGUaGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 49126 | 0.69 | 0.41251 |
Target: 5'- aGGCGGCCGGg-CGuGCcgUUGCCGUCGAu -3' miRNA: 3'- -UUGUCGGUCgaGC-CGa-GACGGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 42671 | 0.69 | 0.41251 |
Target: 5'- cAGCAcGcCCAGCUCGGUgUUGUCGUCGc -3' miRNA: 3'- -UUGU-C-GGUCGAGCCGaGACGGUAGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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