miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19200 5' -62.6 NC_004684.1 + 56575 0.66 0.427334
Target:  5'- cACUCGGUgcGGCCcagccGCCGGAuGCCGcuacGGUg -3'
miRNA:   3'- -UGAGCCA--CCGGcu---CGGCCU-UGGC----CCA- -5'
19200 5' -62.6 NC_004684.1 + 15090 0.66 0.424653
Target:  5'- gGCgCGGUGGCCGcccuggaGGCCGaccuugccgucACCGGGa -3'
miRNA:   3'- -UGaGCCACCGGC-------UCGGCcu---------UGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 15314 0.66 0.418437
Target:  5'- gGC-CGGUGGCaugGAGCgGGcguucaaggccGCCGGGUu -3'
miRNA:   3'- -UGaGCCACCGg--CUCGgCCu----------UGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 54214 0.66 0.413152
Target:  5'- uGCUCGG-GGCCGAgGUCGGccagcagcuguuccaGggcaccgcGCCGGGa -3'
miRNA:   3'- -UGAGCCaCCGGCU-CGGCC---------------U--------UGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 25188 0.66 0.409653
Target:  5'- gACcUGGuUGGCCaGGcGCUGGcACCGGGUg -3'
miRNA:   3'- -UGaGCC-ACCGG-CU-CGGCCuUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 25564 0.66 0.409653
Target:  5'- cGCgUCGGUGGCCaGcGCCu---CCGGGUg -3'
miRNA:   3'- -UG-AGCCACCGG-CuCGGccuuGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 48907 0.66 0.409653
Target:  5'- --gCGGUGGCgGuGCCGGAcACCGa-- -3'
miRNA:   3'- ugaGCCACCGgCuCGGCCU-UGGCcca -5'
19200 5' -62.6 NC_004684.1 + 61464 0.66 0.409653
Target:  5'- cGCcCGGUGGCC-AGCgCGGccAGCCGGu- -3'
miRNA:   3'- -UGaGCCACCGGcUCG-GCC--UUGGCCca -5'
19200 5' -62.6 NC_004684.1 + 55606 0.66 0.400984
Target:  5'- --aCGGUGGCCuGGUCGGcccaCGGGg -3'
miRNA:   3'- ugaGCCACCGGcUCGGCCuug-GCCCa -5'
19200 5' -62.6 NC_004684.1 + 55547 0.66 0.400984
Target:  5'- aACUCGcGccgcUGGCCGccguGGcCCGGuGGCCGGGg -3'
miRNA:   3'- -UGAGC-C----ACCGGC----UC-GGCC-UUGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 9849 0.66 0.392433
Target:  5'- aGCUCGGcGGUCGcGCUcuGGAGgCGGGc -3'
miRNA:   3'- -UGAGCCaCCGGCuCGG--CCUUgGCCCa -5'
19200 5' -62.6 NC_004684.1 + 32762 0.66 0.392433
Target:  5'- gACcUGGUGGCgUGAGCau-GACCGGGUg -3'
miRNA:   3'- -UGaGCCACCG-GCUCGgccUUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 41621 0.66 0.384002
Target:  5'- uGC-CGccGGUgGAGCCGGAcgccagGCCGGGg -3'
miRNA:   3'- -UGaGCcaCCGgCUCGGCCU------UGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 38582 0.67 0.374868
Target:  5'- cGCcCGGUcacaccGUCGAGCaccagcuCGGAACCGGGUg -3'
miRNA:   3'- -UGaGCCAc-----CGGCUCG-------GCCUUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 9541 0.67 0.367504
Target:  5'- aGCU-GGUGcGCCG-GuuGGAGCCGGu- -3'
miRNA:   3'- -UGAgCCAC-CGGCuCggCCUUGGCCca -5'
19200 5' -62.6 NC_004684.1 + 2686 0.67 0.364263
Target:  5'- cGC-CGGgcaccgcauccccGGCCuGGCCGGuGCCGGGg -3'
miRNA:   3'- -UGaGCCa------------CCGGcUCGGCCuUGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 18839 0.67 0.359439
Target:  5'- aACUCGcaggucgGGUCGuGGUCGGuGACCGGGUg -3'
miRNA:   3'- -UGAGCca-----CCGGC-UCGGCC-UUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 7637 0.67 0.3515
Target:  5'- aGCUCGccGUGG-CGGGCgUGGuGACCGGGUc -3'
miRNA:   3'- -UGAGC--CACCgGCUCG-GCC-UUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 55921 0.67 0.343685
Target:  5'- aGCU-GGUGGCCaAGgUGGA-CCGGGg -3'
miRNA:   3'- -UGAgCCACCGGcUCgGCCUuGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 15582 0.67 0.343685
Target:  5'- aGCgCGcGcGGCCuGGCCGuGGACCGGGa -3'
miRNA:   3'- -UGaGC-CaCCGGcUCGGC-CUUGGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.