miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 5' -58.6 NC_004684.1 + 23640 0.66 0.59151
Target:  5'- cGGCcuuGCUGGCaccGCUGCUG-ACCGGGUa -3'
miRNA:   3'- cUCG---UGGCCG---CGAUGACgUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 57960 0.66 0.59151
Target:  5'- -cGCugCGGCuggugcgcacGCUGCUG-GCCGAGg- -3'
miRNA:   3'- cuCGugGCCG----------CGAUGACgUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 62396 0.66 0.59151
Target:  5'- cGGCACCGGgcccuugcccuCGC-GCUGCGCCcaGGUGc -3'
miRNA:   3'- cUCGUGGCC-----------GCGaUGACGUGGc-UCAC- -5'
19202 5' -58.6 NC_004684.1 + 5317 0.66 0.59151
Target:  5'- -cGCGCUGGCGaccgUGCaGCAgUGGGUGg -3'
miRNA:   3'- cuCGUGGCCGCg---AUGaCGUgGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 47632 0.66 0.59151
Target:  5'- cGGGCACCGGCaggccgcgcaGgUACUGCAcgcuCCaGGUGc -3'
miRNA:   3'- -CUCGUGGCCG----------CgAUGACGU----GGcUCAC- -5'
19202 5' -58.6 NC_004684.1 + 41464 0.66 0.588313
Target:  5'- gGGGCugaccCCGGCGgUGCUGgCcaaggugauggacaACCGGGUGu -3'
miRNA:   3'- -CUCGu----GGCCGCgAUGAC-G--------------UGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 23212 0.66 0.580866
Target:  5'- aGGUGCUGGCGC----GCGCCGGGUu -3'
miRNA:   3'- cUCGUGGCCGCGaugaCGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 8281 0.66 0.580866
Target:  5'- cGAcCugCGGCGCUACcacgGCAUCGAa-- -3'
miRNA:   3'- -CUcGugGCCGCGAUGa---CGUGGCUcac -5'
19202 5' -58.6 NC_004684.1 + 65789 0.66 0.580866
Target:  5'- -cGCGCaCGGCGaccgaUGCcgUGCACCGGGc- -3'
miRNA:   3'- cuCGUG-GCCGCg----AUG--ACGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 13601 0.66 0.570263
Target:  5'- cAGgGCUGGcCGgaACU-CACCGAGUGg -3'
miRNA:   3'- cUCgUGGCC-GCgaUGAcGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 4569 0.66 0.570263
Target:  5'- aGGC-CaucgaGGCGCUGCUGCACuCGccacccGGUGu -3'
miRNA:   3'- cUCGuGg----CCGCGAUGACGUG-GC------UCAC- -5'
19202 5' -58.6 NC_004684.1 + 44905 0.66 0.559707
Target:  5'- uGGCACguUGGCGUcggUGC-GCGCCGGGUa -3'
miRNA:   3'- cUCGUG--GCCGCG---AUGaCGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 45279 0.66 0.559707
Target:  5'- uGAGCuGCCaGGCGCUGCUGguUCGcGcUGu -3'
miRNA:   3'- -CUCG-UGG-CCGCGAUGACguGGCuC-AC- -5'
19202 5' -58.6 NC_004684.1 + 2526 0.66 0.559707
Target:  5'- cGGCACugCGGaCGCUGCgGCACCuGcGUGg -3'
miRNA:   3'- cUCGUG--GCC-GCGAUGaCGUGG-CuCAC- -5'
19202 5' -58.6 NC_004684.1 + 18430 0.66 0.558655
Target:  5'- -cGCACCGGCggccgacgugGCUcccgagcaggacgACgGCACCGAGcUGg -3'
miRNA:   3'- cuCGUGGCCG----------CGA-------------UGaCGUGGCUC-AC- -5'
19202 5' -58.6 NC_004684.1 + 61265 0.66 0.557603
Target:  5'- uGGCGgCGGUGUcgggauucgacaGCUGCGCCGGGUc -3'
miRNA:   3'- cUCGUgGCCGCGa-----------UGACGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 54306 0.66 0.549207
Target:  5'- -uGCACCGcGCGaaccgggGC-GCACCGAGUc -3'
miRNA:   3'- cuCGUGGC-CGCga-----UGaCGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 56686 0.66 0.549207
Target:  5'- cGGUGCUGGCGCagaaGCUGgGCCcggGGGUGa -3'
miRNA:   3'- cUCGUGGCCGCGa---UGACgUGG---CUCAC- -5'
19202 5' -58.6 NC_004684.1 + 58229 0.66 0.548161
Target:  5'- -cGCACCGGCaaggucaguugccGCaccUGCcGCGCCGAGg- -3'
miRNA:   3'- cuCGUGGCCG-------------CG---AUGaCGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 13551 0.67 0.528399
Target:  5'- -uGCGCCuGGCggccaucgGCUACUGCGUCGAGg- -3'
miRNA:   3'- cuCGUGG-CCG--------CGAUGACGUGGCUCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.