Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19209 | 3' | -59.5 | NC_004684.1 | + | 47175 | 0.66 | 0.536033 |
Target: 5'- aGCGGC----GGCcaGGGCCGCcgcugcGCGGCGa -3' miRNA: 3'- aUGCCGagaaUCG--CCCGGCG------UGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 58620 | 0.66 | 0.536033 |
Target: 5'- gACGGCcCgUGGCGGcugguGCCGCGCugGGCc -3' miRNA: 3'- aUGCCGaGaAUCGCC-----CGGCGUG--UCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 52917 | 0.66 | 0.536033 |
Target: 5'- cACGGC----GGCGuGGCCGCAUuccaGGCa -3' miRNA: 3'- aUGCCGagaaUCGC-CCGGCGUG----UCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 22621 | 0.66 | 0.536033 |
Target: 5'- uUACGGCgCUgugGGa-GGCCGCcgcCAGCGg -3' miRNA: 3'- -AUGCCGaGAa--UCgcCCGGCGu--GUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 9466 | 0.66 | 0.536033 |
Target: 5'- --gGGCgCUggagcUGGCGGGCaaGCGCAGCc -3' miRNA: 3'- augCCGaGA-----AUCGCCCGg-CGUGUCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 1400 | 0.66 | 0.525711 |
Target: 5'- gGCGGCUaccggUA-CGGGCgGCugAGCc -3' miRNA: 3'- aUGCCGAga---AUcGCCCGgCGugUCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 46305 | 0.66 | 0.525711 |
Target: 5'- uUGCGGCgCUUGGCGuGC-GC-CAGCGu -3' miRNA: 3'- -AUGCCGaGAAUCGCcCGgCGuGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 41432 | 0.66 | 0.515465 |
Target: 5'- gGCGGUggugcGGCGGuGCCGC-CGGUGu -3' miRNA: 3'- aUGCCGagaa-UCGCC-CGGCGuGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 22356 | 0.66 | 0.515465 |
Target: 5'- gGCGGCggc-GGCGgcGGUCGCGCuGGCGg -3' miRNA: 3'- aUGCCGagaaUCGC--CCGGCGUG-UCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 49168 | 0.66 | 0.505301 |
Target: 5'- gUACGGCgcagUCUcGGCGgcGGCgGCGgCGGCGg -3' miRNA: 3'- -AUGCCG----AGAaUCGC--CCGgCGU-GUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 43270 | 0.66 | 0.505301 |
Target: 5'- gUACGGCUgCUgcgucGGCGuGCCGgGCuGCGg -3' miRNA: 3'- -AUGCCGA-GAa----UCGCcCGGCgUGuCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 47944 | 0.66 | 0.505301 |
Target: 5'- --aGGC-CUUGGUGGcGUCGgCACGGCu -3' miRNA: 3'- augCCGaGAAUCGCC-CGGC-GUGUCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 49058 | 0.66 | 0.505301 |
Target: 5'- -uCGGCUCc--GgGGGCgGCAcCGGCGu -3' miRNA: 3'- auGCCGAGaauCgCCCGgCGU-GUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 5859 | 0.66 | 0.495224 |
Target: 5'- gGCGuGCgacUGGCaGGCCGgGCAGCa -3' miRNA: 3'- aUGC-CGagaAUCGcCCGGCgUGUCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 64931 | 0.66 | 0.495224 |
Target: 5'- gUACGGCacgCcgAGCuGGCCGCccaGGCGg -3' miRNA: 3'- -AUGCCGa--GaaUCGcCCGGCGug-UCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 54307 | 0.66 | 0.492219 |
Target: 5'- -uCGGCcccCUUGGCggcugacauuccgaGGGCauaGCACAGCGc -3' miRNA: 3'- auGCCGa--GAAUCG--------------CCCGg--CGUGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 26455 | 0.66 | 0.485239 |
Target: 5'- gUACGGCggcacGCcuGGCCGCgACAGCGu -3' miRNA: 3'- -AUGCCGagaauCGc-CCGGCG-UGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 63228 | 0.66 | 0.485239 |
Target: 5'- gGCGGCUCguugccgGGCGucGGCCcgaGCAGCu -3' miRNA: 3'- aUGCCGAGaa-----UCGC--CCGGcg-UGUCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 51321 | 0.67 | 0.475351 |
Target: 5'- -uCGGCUCaccGGCGGGCCaCGCuuGCu -3' miRNA: 3'- auGCCGAGaa-UCGCCCGGcGUGu-CGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 23000 | 0.67 | 0.475351 |
Target: 5'- aACGGC-CUgGGCcgacuGGCCGCcgucgGCAGCGa -3' miRNA: 3'- aUGCCGaGAaUCGc----CCGGCG-----UGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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