miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19213 3' -65.8 NC_004684.1 + 55115 0.65 0.301961
Target:  5'- cGCUGCGCagcaCGGGCCucgaugauGGUcaUGuacgugaccggaucGCCGCCg -3'
miRNA:   3'- aCGGCGCGg---GUCCGG--------CCA--AC--------------CGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 18368 0.65 0.301961
Target:  5'- aGCCuGCGCCgGuGGCCgaucuguucagcggGGUcgGGCCcgGCCa -3'
miRNA:   3'- aCGG-CGCGGgU-CCGG--------------CCAa-CCGG--CGG- -5'
19213 3' -65.8 NC_004684.1 + 32752 0.66 0.288346
Target:  5'- cGUCGCGgCCGaccuGGuggcgugagcaugaCCGGgUGGCUGCCg -3'
miRNA:   3'- aCGGCGCgGGU----CC--------------GGCCaACCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 59429 0.66 0.276508
Target:  5'- gUGCCGCcuggcggccuuGCCCAccgguguGcGCCGGUcGGCgGCg -3'
miRNA:   3'- -ACGGCG-----------CGGGU-------C-CGGCCAaCCGgCGg -5'
19213 3' -65.8 NC_004684.1 + 53517 0.66 0.270737
Target:  5'- gGuCCGgGCCCAGGaCGGU--GUCGUCg -3'
miRNA:   3'- aC-GGCgCGGGUCCgGCCAacCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 7484 0.66 0.277156
Target:  5'- cGUUuuGgCCuGGCUGGUugucuacgcgcUGGCCGCCg -3'
miRNA:   3'- aCGGcgCgGGuCCGGCCA-----------ACCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 58503 0.66 0.264438
Target:  5'- uUGCCGCGCCgacugcggucCAGcguGCC-GUUGGCgGCg -3'
miRNA:   3'- -ACGGCGCGG----------GUC---CGGcCAACCGgCGg -5'
19213 3' -65.8 NC_004684.1 + 13083 0.66 0.277156
Target:  5'- cGgUGCGCCCcGGUucgcgCGGUgcacGCCGCCc -3'
miRNA:   3'- aCgGCGCGGGuCCG-----GCCAac--CGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 1247 0.66 0.283695
Target:  5'- gGUCGCccggccccgGCCCAGaugcGCUGGcUGGUgGCCa -3'
miRNA:   3'- aCGGCG---------CGGGUC----CGGCCaACCGgCGG- -5'
19213 3' -65.8 NC_004684.1 + 52828 0.66 0.283695
Target:  5'- gGCCccgGCGCaCCAGGUguccagCGGUacGCCGUCa -3'
miRNA:   3'- aCGG---CGCG-GGUCCG------GCCAacCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 30690 0.66 0.283695
Target:  5'- aGgCGacaCGCUCAcGCCGGUgGGCaCGCCa -3'
miRNA:   3'- aCgGC---GCGGGUcCGGCCAaCCG-GCGG- -5'
19213 3' -65.8 NC_004684.1 + 5996 0.66 0.276508
Target:  5'- gGCCuG-GCUCAGGCgcaccaucggacgCGGUggccuuuaGGCCGCCa -3'
miRNA:   3'- aCGG-CgCGGGUCCG-------------GCCAa-------CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 38827 0.66 0.264438
Target:  5'- gGCgGUGCCCGacGGCCuGG-UGGCC-CUg -3'
miRNA:   3'- aCGgCGCGGGU--CCGG-CCaACCGGcGG- -5'
19213 3' -65.8 NC_004684.1 + 43977 0.66 0.283036
Target:  5'- aGCCGUGCgCGGGCguacccggccagcUGcGUUGGCCagGUCa -3'
miRNA:   3'- aCGGCGCGgGUCCG-------------GC-CAACCGG--CGG- -5'
19213 3' -65.8 NC_004684.1 + 9793 0.66 0.283695
Target:  5'- cGCCGagGCCCuGcGCCGG-UGGCaC-CCg -3'
miRNA:   3'- aCGGCg-CGGGuC-CGGCCaACCG-GcGG- -5'
19213 3' -65.8 NC_004684.1 + 35927 0.66 0.283695
Target:  5'- gGUCGCGCCgAGGaccugcucuaCGGgcGGCUGUUc -3'
miRNA:   3'- aCGGCGCGGgUCCg---------GCCaaCCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 51992 0.66 0.283695
Target:  5'- gGCCaucGCGCCCu-GCCGGUagaucgGGgCGUCg -3'
miRNA:   3'- aCGG---CGCGGGucCGGCCAa-----CCgGCGG- -5'
19213 3' -65.8 NC_004684.1 + 9839 0.66 0.283695
Target:  5'- uUGCCGuCGaucaCCGccGCCGGUgagcuGCCGCCg -3'
miRNA:   3'- -ACGGC-GCg---GGUc-CGGCCAac---CGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 65770 0.66 0.270737
Target:  5'- cGCCGCGC----GCCGGUgGGCgCGCg -3'
miRNA:   3'- aCGGCGCGggucCGGCCAaCCG-GCGg -5'
19213 3' -65.8 NC_004684.1 + 25318 0.66 0.277156
Target:  5'- cGUCG-GCCCuGGCgGcGUaUGGCgGCCu -3'
miRNA:   3'- aCGGCgCGGGuCCGgC-CA-ACCGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.