miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19213 3' -65.8 NC_004684.1 + 456 0.72 0.113159
Target:  5'- -aUCGCGCCgGaGGCCuucgccgaGGUugUGGCCGCCa -3'
miRNA:   3'- acGGCGCGGgU-CCGG--------CCA--ACCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 494 0.77 0.047125
Target:  5'- gGCCGCGCCgaAGGCCGcGccgaaGGUCGCCa -3'
miRNA:   3'- aCGGCGCGGg-UCCGGC-Caa---CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 530 0.66 0.264438
Target:  5'- cGCUGaCGUgCuGGCCagcgcGGUcgaGGCCGCCa -3'
miRNA:   3'- aCGGC-GCGgGuCCGG-----CCAa--CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 689 0.66 0.279757
Target:  5'- cGCCGCGCagcgcaagaccgccgCCGGGUgGGaagaccUGGgcaCCGCCg -3'
miRNA:   3'- aCGGCGCG---------------GGUCCGgCCa-----ACC---GGCGG- -5'
19213 3' -65.8 NC_004684.1 + 746 0.71 0.119186
Target:  5'- gGCCGcCGCCgAGGCCaucgUGGCCaCCa -3'
miRNA:   3'- aCGGC-GCGGgUCCGGcca-ACCGGcGG- -5'
19213 3' -65.8 NC_004684.1 + 864 0.76 0.054495
Target:  5'- cGCCGUGCCCgccGGGCCGcGcUgaaggcggcccgcgaGGCCGCCg -3'
miRNA:   3'- aCGGCGCGGG---UCCGGC-CaA---------------CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 1247 0.66 0.283695
Target:  5'- gGUCGCccggccccgGCCCAGaugcGCUGGcUGGUgGCCa -3'
miRNA:   3'- aCGGCG---------CGGGUC----CGGCCaACCGgCGG- -5'
19213 3' -65.8 NC_004684.1 + 1382 0.67 0.258258
Target:  5'- gGCCGaCGCCaAGGCCGccGUugcacUGGCCaGCg -3'
miRNA:   3'- aCGGC-GCGGgUCCGGC--CA-----ACCGG-CGg -5'
19213 3' -65.8 NC_004684.1 + 1620 0.69 0.166171
Target:  5'- gUGCgCGCGCCCAccGGCgCGcGgcGGCCaacGCCc -3'
miRNA:   3'- -ACG-GCGCGGGU--CCG-GC-CaaCCGG---CGG- -5'
19213 3' -65.8 NC_004684.1 + 1767 0.68 0.216674
Target:  5'- aGCUGCGCgCguGGCUGGacgccaaccaggacGCCGCCg -3'
miRNA:   3'- aCGGCGCG-GguCCGGCCaac-----------CGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 1929 0.7 0.135584
Target:  5'- cUGCCGgGCCUGGuaCCGGcgcacggUGGCCGCg -3'
miRNA:   3'- -ACGGCgCGGGUCc-GGCCa------ACCGGCGg -5'
19213 3' -65.8 NC_004684.1 + 2030 0.74 0.070444
Target:  5'- aUGaCCGuCGCCCugguGGCCcuGggGGCCGCCa -3'
miRNA:   3'- -AC-GGC-GCGGGu---CCGGc-CaaCCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 2071 0.66 0.290357
Target:  5'- cUGCCugGCGCU--GGCCguGGUgcacagcgaGGCCGCCg -3'
miRNA:   3'- -ACGG--CGCGGguCCGG--CCAa--------CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 2281 0.7 0.138748
Target:  5'- uUGCCGCcaGCCUGGGCCacgacgcGGUgcUGaCCGCCg -3'
miRNA:   3'- -ACGGCG--CGGGUCCGG-------CCA--ACcGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 2336 0.67 0.239276
Target:  5'- cGCCGUcuaCCCGGacuGCCGcccugaguucgUGGCCGCCa -3'
miRNA:   3'- aCGGCGc--GGGUC---CGGCca---------ACCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 2567 0.67 0.240427
Target:  5'- gGCCuuCGCCgAGGCCGGUgUGcCCGaCCc -3'
miRNA:   3'- aCGGc-GCGGgUCCGGCCA-ACcGGC-GG- -5'
19213 3' -65.8 NC_004684.1 + 2686 0.68 0.213002
Target:  5'- cGCCGgGCaCCGcauccccggccuGGCCGGUgccgggGGCaagugCGCCa -3'
miRNA:   3'- aCGGCgCG-GGU------------CCGGCCAa-----CCG-----GCGG- -5'
19213 3' -65.8 NC_004684.1 + 2838 0.66 0.277156
Target:  5'- -cCUGCGCaCCAacCCGGUcaccaaGGCCGCCg -3'
miRNA:   3'- acGGCGCG-GGUccGGCCAa-----CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 3038 0.71 0.119186
Target:  5'- gGCCGCacaacgagGCCCGGG-UGG-UGGCgCGCCg -3'
miRNA:   3'- aCGGCG--------CGGGUCCgGCCaACCG-GCGG- -5'
19213 3' -65.8 NC_004684.1 + 3179 0.67 0.245666
Target:  5'- cGCCGUGuCCCAGGugucgauCCGGcacaccGGCaaCGCCg -3'
miRNA:   3'- aCGGCGC-GGGUCC-------GGCCaa----CCG--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.