Results 1 - 20 of 289 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19213 | 3' | -65.8 | NC_004684.1 | + | 43242 | 0.72 | 0.107417 |
Target: 5'- cGCCaGCGCgCGGGCCGGagagcacGGCCaugucGCCg -3' miRNA: 3'- aCGG-CGCGgGUCCGGCCaa-----CCGG-----CGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 47293 | 0.73 | 0.082601 |
Target: 5'- aGCCGaacaGCUUGaGCUGGUUGGCCGUCa -3' miRNA: 3'- aCGGCg---CGGGUcCGGCCAACCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 5931 | 0.73 | 0.087082 |
Target: 5'- gGCCGCGCuggccaCCGGG-CGGUccaaccUGGCCGCg -3' miRNA: 3'- aCGGCGCG------GGUCCgGCCA------ACCGGCGg -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 11150 | 0.73 | 0.091793 |
Target: 5'- gGUCGCGCC---GUCGGUggaccUGGCCGCCa -3' miRNA: 3'- aCGGCGCGGgucCGGCCA-----ACCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 25010 | 0.73 | 0.091793 |
Target: 5'- gGUCGCGCUCAGcGCCGGUgcagcuggaGGCgGCa -3' miRNA: 3'- aCGGCGCGGGUC-CGGCCAa--------CCGgCGg -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 40448 | 0.73 | 0.094239 |
Target: 5'- aGCgGUGCCCAGGC-----GGCCGCCu -3' miRNA: 3'- aCGgCGCGGGUCCGgccaaCCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 18221 | 0.73 | 0.094239 |
Target: 5'- aUGCCGCaCUgGGGCaagGGUccguacaacgUGGCCGCCa -3' miRNA: 3'- -ACGGCGcGGgUCCGg--CCA----------ACCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 42201 | 0.72 | 0.099316 |
Target: 5'- gGCCGUggaGCUgGuGGCCGacgUGGCCGCCg -3' miRNA: 3'- aCGGCG---CGGgU-CCGGCca-ACCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 48777 | 0.72 | 0.107417 |
Target: 5'- uUGCCGaCGCCgggCGGGCCgaugaugcaGGacaGGCCGCCg -3' miRNA: 3'- -ACGGC-GCGG---GUCCGG---------CCaa-CCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 13258 | 0.74 | 0.076291 |
Target: 5'- gGCCGUGaccgCCAGcgcGCUGG-UGGCCGCCg -3' miRNA: 3'- aCGGCGCg---GGUC---CGGCCaACCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 26310 | 0.74 | 0.074292 |
Target: 5'- aGCU-CGgCCAGGCCGccgGGCCGCCg -3' miRNA: 3'- aCGGcGCgGGUCCGGCcaaCCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 22992 | 0.74 | 0.072343 |
Target: 5'- cGCUGaucaacgGCCUGGGCCGacUGGCCGCCg -3' miRNA: 3'- aCGGCg------CGGGUCCGGCcaACCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 22465 | 0.81 | 0.022641 |
Target: 5'- cGcCCGCGCuCCAGGCCGGUucccUGGCagcgGCCa -3' miRNA: 3'- aC-GGCGCG-GGUCCGGCCA----ACCGg---CGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 52420 | 0.78 | 0.037351 |
Target: 5'- aGuuGCgGUCCAGGCCGGgggucucgaugucGGCCGCCa -3' miRNA: 3'- aCggCG-CGGGUCCGGCCaa-----------CCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 65891 | 0.77 | 0.043461 |
Target: 5'- cGCgGCGCgCAGGuuGGccaccagGGCCGCCg -3' miRNA: 3'- aCGgCGCGgGUCCggCCaa-----CCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 36770 | 0.76 | 0.048413 |
Target: 5'- gGCCGCGCCCGGuGCCGacgcUGGUCGgCg -3' miRNA: 3'- aCGGCGCGGGUC-CGGCca--ACCGGCgG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 24884 | 0.75 | 0.060017 |
Target: 5'- aGCCGCGCCaucguGGCuaCGaGaUGGCCGCCg -3' miRNA: 3'- aCGGCGCGGgu---CCG--GC-CaACCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 3461 | 0.75 | 0.060663 |
Target: 5'- cGCCGUcucGCCCaagcucagccacgccGGGCCGcaccgUGGCCGCCa -3' miRNA: 3'- aCGGCG---CGGG---------------UCCGGCca---ACCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 60733 | 0.75 | 0.066788 |
Target: 5'- aGagGUGCCCGGcGaCCGGgUGGCCGCCg -3' miRNA: 3'- aCggCGCGGGUC-C-GGCCaACCGGCGG- -5' |
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19213 | 3' | -65.8 | NC_004684.1 | + | 4459 | 0.74 | 0.070444 |
Target: 5'- gGCCgcacguGCGCgCgAGGCCGucGUUGGCCGCUa -3' miRNA: 3'- aCGG------CGCG-GgUCCGGC--CAACCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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