miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19213 3' -65.8 NC_004684.1 + 39328 1.09 0.000127
Target:  5'- uUGCCGCGCCCAGGCCGGUUGGCCGCCc -3'
miRNA:   3'- -ACGGCGCGGGUCCGGCCAACCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 22465 0.81 0.022641
Target:  5'- cGcCCGCGCuCCAGGCCGGUucccUGGCagcgGCCa -3'
miRNA:   3'- aC-GGCGCG-GGUCCGGCCA----ACCGg---CGG- -5'
19213 3' -65.8 NC_004684.1 + 45107 0.79 0.029734
Target:  5'- cGCCGcCGCgCGGGCC--UUGGCCGCCg -3'
miRNA:   3'- aCGGC-GCGgGUCCGGccAACCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 52420 0.78 0.037351
Target:  5'- aGuuGCgGUCCAGGCCGGgggucucgaugucGGCCGCCa -3'
miRNA:   3'- aCggCG-CGGGUCCGGCCaa-----------CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 42046 0.78 0.037963
Target:  5'- gGCCGcCGCCaAGGCCaccgGGgaGGCCGCCa -3'
miRNA:   3'- aCGGC-GCGGgUCCGG----CCaaCCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 27243 0.77 0.042188
Target:  5'- gGCCGUccugaacaggaucGCCgAGGUCGGUgccgaGGCCGCCa -3'
miRNA:   3'- aCGGCG-------------CGGgUCCGGCCAa----CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 65891 0.77 0.043461
Target:  5'- cGCgGCGCgCAGGuuGGccaccagGGCCGCCg -3'
miRNA:   3'- aCGgCGCGgGUCCggCCaa-----CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 494 0.77 0.047125
Target:  5'- gGCCGCGCCgaAGGCCGcGccgaaGGUCGCCa -3'
miRNA:   3'- aCGGCGCGGg-UCCGGC-Caa---CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 62486 0.77 0.047125
Target:  5'- aUGgUGcCGCCgAGGCCGGUggcgaccaGGCCGCCu -3'
miRNA:   3'- -ACgGC-GCGGgUCCGGCCAa-------CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 36770 0.76 0.048413
Target:  5'- gGCCGCGCCCGGuGCCGacgcUGGUCGgCg -3'
miRNA:   3'- aCGGCGCGGGUC-CGGCca--ACCGGCgG- -5'
19213 3' -65.8 NC_004684.1 + 864 0.76 0.054495
Target:  5'- cGCCGUGCCCgccGGGCCGcGcUgaaggcggcccgcgaGGCCGCCg -3'
miRNA:   3'- aCGGCGCGGG---UCCGGC-CaA---------------CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 54280 0.75 0.056885
Target:  5'- cUGCCGCGCU--GGCCGGUggGGCgGCg -3'
miRNA:   3'- -ACGGCGCGGguCCGGCCAa-CCGgCGg -5'
19213 3' -65.8 NC_004684.1 + 43689 0.75 0.059537
Target:  5'- cGCCGcCGCCCAGGUuggaggccacgcucUGGUccgGGCCGaCCa -3'
miRNA:   3'- aCGGC-GCGGGUCCG--------------GCCAa--CCGGC-GG- -5'
19213 3' -65.8 NC_004684.1 + 24884 0.75 0.060017
Target:  5'- aGCCGCGCCaucguGGCuaCGaGaUGGCCGCCg -3'
miRNA:   3'- aCGGCGCGGgu---CCG--GC-CaACCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 3461 0.75 0.060663
Target:  5'- cGCCGUcucGCCCaagcucagccacgccGGGCCGcaccgUGGCCGCCa -3'
miRNA:   3'- aCGGCG---CGGG---------------UCCGGCca---ACCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 41730 0.75 0.063315
Target:  5'- gGUCGCGCCCuGcCCGGUaccGCCGCCg -3'
miRNA:   3'- aCGGCGCGGGuCcGGCCAac-CGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 40399 0.75 0.064856
Target:  5'- cGCCGCGCCCGccgcgcucgcaccGGCCuGGaUGGCgGCg -3'
miRNA:   3'- aCGGCGCGGGU-------------CCGG-CCaACCGgCGg -5'
19213 3' -65.8 NC_004684.1 + 30881 0.75 0.065029
Target:  5'- cGCCGUGCCCAGGCUcaGcGUcccGGCCuuGCCg -3'
miRNA:   3'- aCGGCGCGGGUCCGG--C-CAa--CCGG--CGG- -5'
19213 3' -65.8 NC_004684.1 + 60733 0.75 0.066788
Target:  5'- aGagGUGCCCGGcGaCCGGgUGGCCGCCg -3'
miRNA:   3'- aCggCGCGGGUC-C-GGCCaACCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 4459 0.74 0.070444
Target:  5'- gGCCgcacguGCGCgCgAGGCCGucGUUGGCCGCUa -3'
miRNA:   3'- aCGG------CGCG-GgUCCGGC--CAACCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.