miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19216 3' -53.4 NC_004684.1 + 25979 0.66 0.858983
Target:  5'- gUGcgCGAAGGCaACCcgcuGGCGCUccuGGCg -3'
miRNA:   3'- gACuaGUUUCCGcUGGu---CUGCGG---UCG- -5'
19216 3' -53.4 NC_004684.1 + 58614 0.66 0.867137
Target:  5'- uUGAUCGAcggcccguGGCGGCUGG-UGCCGcGCu -3'
miRNA:   3'- gACUAGUUu-------CCGCUGGUCuGCGGU-CG- -5'
19216 3' -53.4 NC_004684.1 + 65665 0.66 0.867137
Target:  5'- -cGGUCccGAGuaGGCCu-GCGCCAGCa -3'
miRNA:   3'- gaCUAGu-UUCcgCUGGucUGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 63866 0.66 0.833129
Target:  5'- gUGcgCGGuGGCGGCCuucaucGGGC-CCAGCg -3'
miRNA:   3'- gACuaGUUuCCGCUGG------UCUGcGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 25862 0.66 0.833129
Target:  5'- cCUGuUCAAcGGCcucGGCCAGgccgggcagaACGUCAGCg -3'
miRNA:   3'- -GACuAGUUuCCG---CUGGUC----------UGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 16333 0.66 0.841971
Target:  5'- aUGAccagCGAGGaGCGGCU-GGCGCUGGCc -3'
miRNA:   3'- gACUa---GUUUC-CGCUGGuCUGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 65619 0.66 0.858983
Target:  5'- cCUGGUU---GGCGuCCAGccacGCGCgCAGCu -3'
miRNA:   3'- -GACUAGuuuCCGCuGGUC----UGCG-GUCG- -5'
19216 3' -53.4 NC_004684.1 + 38303 0.66 0.867137
Target:  5'- gUGGUCAAcGGGuCGAUCAccGAgGCCAaGCu -3'
miRNA:   3'- gACUAGUU-UCC-GCUGGU--CUgCGGU-CG- -5'
19216 3' -53.4 NC_004684.1 + 10373 0.66 0.850592
Target:  5'- -aGAUCGcgcgcaccgccGGGU-ACCAGGcCGCCAGCg -3'
miRNA:   3'- gaCUAGUu----------UCCGcUGGUCU-GCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 8918 0.66 0.833129
Target:  5'- cCUGG-CAGAucGGCGACgAGgauguGCGCCuGCa -3'
miRNA:   3'- -GACUaGUUU--CCGCUGgUC-----UGCGGuCG- -5'
19216 3' -53.4 NC_004684.1 + 24506 0.66 0.867137
Target:  5'- -cGGUCuc-GGUG-CCAGAgGCCGGg -3'
miRNA:   3'- gaCUAGuuuCCGCuGGUCUgCGGUCg -5'
19216 3' -53.4 NC_004684.1 + 6694 0.66 0.867137
Target:  5'- -aGGUCGAccuGGCcACCGucGGCGCgAGCa -3'
miRNA:   3'- gaCUAGUUu--CCGcUGGU--CUGCGgUCG- -5'
19216 3' -53.4 NC_004684.1 + 64972 0.66 0.867137
Target:  5'- -aGGUCGAugaccGCGACgCGGGucugcggcuCGCCAGCg -3'
miRNA:   3'- gaCUAGUUuc---CGCUG-GUCU---------GCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 64213 0.66 0.853977
Target:  5'- -gGAUCGAcaccuGGGacacggcguuggccuCGGCCAGGCGCUGGg -3'
miRNA:   3'- gaCUAGUU-----UCC---------------GCUGGUCUGCGGUCg -5'
19216 3' -53.4 NC_004684.1 + 24789 0.66 0.841971
Target:  5'- gCUGGUCGAua-CGGCCaAGGCGgUCGGCa -3'
miRNA:   3'- -GACUAGUUuccGCUGG-UCUGC-GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 31093 0.66 0.841971
Target:  5'- ----cCGAGGGCuGGCaGGACGCCGcGCa -3'
miRNA:   3'- gacuaGUUUCCG-CUGgUCUGCGGU-CG- -5'
19216 3' -53.4 NC_004684.1 + 28014 0.66 0.850592
Target:  5'- -aGGUCGAuGGCcugGACguGACaCCGGCa -3'
miRNA:   3'- gaCUAGUUuCCG---CUGguCUGcGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 11148 0.66 0.858983
Target:  5'- gUGGUCGcgccgucGGUgGACCuGGcCGCCAGCg -3'
miRNA:   3'- gACUAGUuu-----CCG-CUGGuCU-GCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 36789 0.66 0.867137
Target:  5'- gCUGGUCGgcGGCGGCUcg--GUCAGCu -3'
miRNA:   3'- -GACUAGUuuCCGCUGGucugCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 63364 0.66 0.867137
Target:  5'- -aGcgCAccGaGCGGCCGacGCGCCAGCc -3'
miRNA:   3'- gaCuaGUuuC-CGCUGGUc-UGCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.